Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31677 | 3' | -54.5 | NC_006883.1 | + | 23443 | 0.88 | 0.154 |
Target: 5'- uGGUCCAG-CaGGUCCUcCAGGUCCAGCa -3' miRNA: 3'- -CCAGGUCuG-CCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27230 | 0.89 | 0.126022 |
Target: 5'- aGGUCCAG-CaGGUCCUACAGGUCCAu- -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23146 | 0.92 | 0.081538 |
Target: 5'- uGGaCCAGAUGGUCCUACAGGUCCAc- -3' miRNA: 3'- -CCaGGUCUGCCAGGAUGUCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23644 | 0.96 | 0.050931 |
Target: 5'- aGGUCCAG-CaGGUCCUACAGGUCCAACu -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26269 | 0.96 | 0.047057 |
Target: 5'- uGGUCCAG-CaGGUCCUACAGGUCCAGCa -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28069 | 0.82 | 0.327902 |
Target: 5'- aGGUCCAGGCGGaacuggUCCUGCuGGUCCu-- -3' miRNA: 3'- -CCAGGUCUGCC------AGGAUGuCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27464 | 0.81 | 0.350098 |
Target: 5'- aGGUCCcacaGGACcaacuGGUCCcACAGGUCCAACu -3' miRNA: 3'- -CCAGG----UCUG-----CCAGGaUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27848 | 0.81 | 0.373342 |
Target: 5'- uGGUCCuacaGGaCCUACAGGUCCAACu -3' miRNA: 3'- -CCAGGucugCCaGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21680 | 0.76 | 0.620912 |
Target: 5'- uGGUCCuccugguacuGGAucuccUGGUCCUGCAGGUCCu-- -3' miRNA: 3'- -CCAGG----------UCU-----GCCAGGAUGUCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28009 | 0.76 | 0.601049 |
Target: 5'- uGGUCCAGGCGGa---ACuGGUCCAACu -3' miRNA: 3'- -CCAGGUCUGCCaggaUGuCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 24678 | 0.77 | 0.581272 |
Target: 5'- -cUCCuccaGGUCCUACAGGUCCAAg -3' miRNA: 3'- ccAGGucugCCAGGAUGUCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21740 | 0.77 | 0.561633 |
Target: 5'- uGGUCCAacUGGUCCUGCuGGUCCu-- -3' miRNA: 3'- -CCAGGUcuGCCAGGAUGuCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23416 | 0.77 | 0.55188 |
Target: 5'- uGGUCCuGcUGGUCCUcCAGGUCCAu- -3' miRNA: 3'- -CCAGGuCuGCCAGGAuGUCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27383 | 0.78 | 0.522953 |
Target: 5'- aGGUCCAG-CaGGUCCUcCAGGUCCu-- -3' miRNA: 3'- -CCAGGUCuG-CCAGGAuGUCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26521 | 0.78 | 0.503996 |
Target: 5'- uGGUCCuGcUGGUCCacCAGGUCCAACu -3' miRNA: 3'- -CCAGGuCuGCCAGGauGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23119 | 0.78 | 0.494629 |
Target: 5'- uGGUCCcacaGGUCCcACAGGUCCAACn -3' miRNA: 3'- -CCAGGucugCCAGGaUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21644 | 0.79 | 0.476139 |
Target: 5'- aGGUCCGcaagguGAUgcuGGUCCaACAGGUCCAACu -3' miRNA: 3'- -CCAGGU------CUG---CCAGGaUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23077 | 0.8 | 0.426311 |
Target: 5'- aGGUCCAacUGGUCCUGuagguccuucaaaucCAGGUCCAACu -3' miRNA: 3'- -CCAGGUcuGCCAGGAU---------------GUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26350 | 0.8 | 0.397611 |
Target: 5'- aGGUCCAacUGGUCCUGCuGGUCCcACa -3' miRNA: 3'- -CCAGGUcuGCCAGGAUGuCCAGGuUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28228 | 0.8 | 0.38941 |
Target: 5'- uGGUCCAGGuggaacUGGUCCgACuGGUCCAACu -3' miRNA: 3'- -CCAGGUCU------GCCAGGaUGuCCAGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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