miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 22877 0.72 0.810995
Target:  5'- aGGUCCAacUGGUCCUGCuggugcuccAGGUUUAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUG---------UCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23041 0.73 0.784793
Target:  5'- uGGUCCAacUGGUCCUcaAGGUCCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAugUCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 21794 0.73 0.748082
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28270 0.73 0.747142
Target:  5'- aGGUCCuucagguGGAagUGGUCCUcCAGGUCCAc- -3'
miRNA:   3'- -CCAGG-------UCU--GCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 21896 0.74 0.729115
Target:  5'- aGGUCCuaguGGUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 23701 0.74 0.729115
Target:  5'- uGGaCCAGAUGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- -CCaGGUCUGCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21524 0.75 0.68046
Target:  5'- uGGUCCAGgugGCGGUCCU---GGUCCuGCu -3'
miRNA:   3'- -CCAGGUC---UGCCAGGAuguCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 21614 0.75 0.660678
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCGc- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 222788 0.75 0.660678
Target:  5'- uGGUCCuGuuGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGuCugCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 22922 0.75 0.65075
Target:  5'- uGGUCCuGAUGGUCCaAguGGUCCu-- -3'
miRNA:   3'- -CCAGGuCUGCCAGGaUguCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28033 0.75 0.65075
Target:  5'- uGGUCCuacuggugauGAUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---------CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 27875 0.75 0.65075
Target:  5'- uGGUCCAacUGGUCCUucagguggaACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGA---------UGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21680 0.76 0.620912
Target:  5'- uGGUCCuccugguacuGGAucuccUGGUCCUGCAGGUCCu-- -3'
miRNA:   3'- -CCAGG----------UCU-----GCCAGGAUGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 28009 0.76 0.601049
Target:  5'- uGGUCCAGGCGGa---ACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUCUGCCaggaUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 24678 0.77 0.581272
Target:  5'- -cUCCuccaGGUCCUACAGGUCCAAg -3'
miRNA:   3'- ccAGGucugCCAGGAUGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 21740 0.77 0.561633
Target:  5'- uGGUCCAacUGGUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 23416 0.77 0.55188
Target:  5'- uGGUCCuGcUGGUCCUcCAGGUCCAu- -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 27383 0.78 0.522953
Target:  5'- aGGUCCAG-CaGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 26521 0.78 0.503996
Target:  5'- uGGUCCuGcUGGUCCacCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGauGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23119 0.78 0.494629
Target:  5'- uGGUCCcacaGGUCCcACAGGUCCAACn -3'
miRNA:   3'- -CCAGGucugCCAGGaUGUCCAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.