miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 5' -60 NC_006883.1 + 211476 0.7 0.618964
Target:  5'- gCUuGUGGUCCUCCAGGauaagcUCCaUCCUGu- -3'
miRNA:   3'- -GAcCACCAGGAGGUCC------AGG-AGGACca -5'
31677 5' -60 NC_006883.1 + 28250 0.71 0.580432
Target:  5'- aCUGGUccaacuGGUCCaaCAGGUCCUUCaGGUg -3'
miRNA:   3'- -GACCA------CCAGGagGUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 28208 0.71 0.570868
Target:  5'- aCUGGUggagauGGUCCUCCuGGUCCagguggaaCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGuCCAGGag------GACCA- -5'
31677 5' -60 NC_006883.1 + 27268 0.72 0.542427
Target:  5'- gUGGagaUGGUCCUCCAGGUCCa---GGUg -3'
miRNA:   3'- gACC---ACCAGGAGGUCCAGGaggaCCA- -5'
31677 5' -60 NC_006883.1 + 26393 0.72 0.496161
Target:  5'- aCUGGUccagacGGUCCUCCAGGUCCa---GGUg -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGaggaCCA- -5'
31677 5' -60 NC_006883.1 + 26525 0.73 0.487117
Target:  5'- cCUGcUGGUCCaCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACcACCAGGaGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 222747 0.73 0.481728
Target:  5'- aCUGGUccuguuggaaauccuGGUCCUaCuGGUCCUUCUGGUg -3'
miRNA:   3'- -GACCA---------------CCAGGAgGuCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 26492 0.74 0.409625
Target:  5'- gCUGGUgcaacuGGUCCUgCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAgGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 21660 0.75 0.354931
Target:  5'- gCUGGUccaacaGGUCCaaCuGGUCCUCCUGGUn -3'
miRNA:   3'- -GACCA------CCAGGagGuCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 222657 0.76 0.312307
Target:  5'- gCUGGUccuacuGGUUCUCCuGGUCCUgCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGuCCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 22994 0.76 0.308265
Target:  5'- gCUGGUgaugauggugcuccuGGUCCUCaAGGUCCUCCaGGUa -3'
miRNA:   3'- -GACCA---------------CCAGGAGgUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 28286 0.77 0.286114
Target:  5'- --aGUGGUCCUCCAGGUCCaCCaGGa -3'
miRNA:   3'- gacCACCAGGAGGUCCAGGaGGaCCa -5'
31677 5' -60 NC_006883.1 + 21831 0.77 0.286114
Target:  5'- --aGUGGUCCUCCAGGUCCgagUGGUg -3'
miRNA:   3'- gacCACCAGGAGGUCCAGGaggACCA- -5'
31677 5' -60 NC_006883.1 + 23063 0.77 0.279842
Target:  5'- cCUGcUGGUUCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 23452 0.78 0.238979
Target:  5'- -aGGUccuccaGGUCCagCAGGUCCUCCUGGa -3'
miRNA:   3'- gaCCA------CCAGGagGUCCAGGAGGACCa -5'
31677 5' -60 NC_006883.1 + 26268 0.79 0.219974
Target:  5'- aUGGUccagcagguccuacaGGUCCagCAGGUCCUCCUGGa -3'
miRNA:   3'- gACCA---------------CCAGGagGUCCAGGAGGACCa -5'
31677 5' -60 NC_006883.1 + 28181 0.79 0.212939
Target:  5'- --aGUGGUCCUCCAGGaCCUCCaGGUc -3'
miRNA:   3'- gacCACCAGGAGGUCCaGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 21968 0.8 0.198512
Target:  5'- --aGUGGUCCUCCuGGUCCUgCUGGa -3'
miRNA:   3'- gacCACCAGGAGGuCCAGGAgGACCa -5'
31677 5' -60 NC_006883.1 + 22938 0.8 0.180608
Target:  5'- --aGUGGUCCUCCuGGUCC-CCUGGUc -3'
miRNA:   3'- gacCACCAGGAGGuCCAGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 21459 0.81 0.156436
Target:  5'- aCUGGUccugcuGGUCCUCCAGGUCCaaCUGGa -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGagGACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.