miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 3' -56.4 NC_006883.1 + 21644 0.74 0.611826
Target:  5'- aGGUCCgcaaGGUGaugcUGGUCCaaCAGGUCCa -3'
miRNA:   3'- -CCAGGa---UCACc---ACCAGGagGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27884 0.75 0.602081
Target:  5'- uGGUCCUucaGGUGGaacUGGUCCaaCuGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 235930 0.75 0.582657
Target:  5'- aGUgCUGGUGGUGGUgCUUCuGGUUCu -3'
miRNA:   3'- cCAgGAUCACCACCAgGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26521 0.75 0.553778
Target:  5'- uGGUCCUGc---UGGUCCaCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaccACCAGGaGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28084 0.76 0.544242
Target:  5'- uGGUCCUGc---UGGUCCUCCAGGaCCu -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCaGG- -5'
31678 3' -56.4 NC_006883.1 + 27221 0.76 0.497469
Target:  5'- uGGUCCUAcaGGUccagcaGGUCCUaCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaCCA------CCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28165 0.76 0.497469
Target:  5'- uGGUUCUGaUGGaggaagUGGUCCUCCAGGaCCu -3'
miRNA:   3'- -CCAGGAUcACC------ACCAGGAGGUCCaGG- -5'
31678 3' -56.4 NC_006883.1 + 21680 0.77 0.452585
Target:  5'- uGGUCCUccUGGUacuggaucuccuGGUCCUgCAGGUCCu -3'
miRNA:   3'- -CCAGGAucACCA------------CCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22987 0.78 0.447347
Target:  5'- uGGUCCUGcUGGUgaugauggugcuccuGGUCCUCaAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA---------------CCAGGAGgUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21961 0.78 0.435257
Target:  5'- uGGUCCaa---GUGGUCCUCCuGGUCCu -3'
miRNA:   3'- -CCAGGaucacCACCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21749 0.78 0.430134
Target:  5'- uGGUCCUGcUGGUccuacggguccagacGGUCCUaCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA---------------CCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 24685 0.78 0.426738
Target:  5'- aGGUCCUacaGGUccaaGUGGUCCaUCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCAc---CACCAGGaGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222650 0.79 0.393679
Target:  5'- uGGUCCUGcUGGUccuacuGGUUCUCCuGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23443 0.79 0.354764
Target:  5'- uGGUCC-AGca--GGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGaUCaccaCCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27356 0.79 0.354764
Target:  5'- uGGUUCUgauGGUGGaacUGGUaCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAgGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26707 0.8 0.347314
Target:  5'- aGGUCCUGc---UGGUUCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23059 0.81 0.311757
Target:  5'- aGGUCCUGc---UGGUUCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28111 0.82 0.25487
Target:  5'- uGGUgCUgacGGUGaugaugggggaaGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAgGA---UCAC------------CACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21569 0.82 0.249104
Target:  5'- uGGUCCgAGUGGUGGUCCUgguccuacuggaCCugcuGGUCCu -3'
miRNA:   3'- -CCAGGaUCACCACCAGGA------------GGu---CCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22922 0.83 0.227111
Target:  5'- uGGUCCUGaUGGUccaaguGGUCCUCCuGGUCCc -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGuCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.