miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 5' -59.6 NC_006883.1 + 222747 0.76 0.342184
Target:  5'- aCUGGUCCUGUUGGaaaUCCuGGUCCu -3'
miRNA:   3'- -GACCAGGACGACCaggAGGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 21960 0.76 0.334955
Target:  5'- aUGGUCCaagUGGUCCUCCuGGUCCu -3'
miRNA:   3'- gACCAGGacgACCAGGAGGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 28201 0.76 0.327838
Target:  5'- -aGGUCCUacugGUggagaUGGUCCUCCuGGUCCAg -3'
miRNA:   3'- gaCCAGGA----CG-----ACCAGGAGGuCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27873 0.77 0.300497
Target:  5'- aCUGGUCCaaCUGGUCCUUCAgguggaacuGGUCCAa -3'
miRNA:   3'- -GACCAGGacGACCAGGAGGU---------CCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23644 0.77 0.287501
Target:  5'- -aGGUCCaGCaGGUCCUaCAGGUCCAa -3'
miRNA:   3'- gaCCAGGaCGaCCAGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27219 0.77 0.28117
Target:  5'- cCUGGUCCUacagguccaGCaGGUCCUaCAGGUCCAu -3'
miRNA:   3'- -GACCAGGA---------CGaCCAGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23154 0.78 0.256954
Target:  5'- aUGGUCCUaCaGGUCCaCCAGGUCCAg -3'
miRNA:   3'- gACCAGGAcGaCCAGGaGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 21644 0.79 0.229115
Target:  5'- -aGGUCCgcaaggugaUGCUGGUCCaaCAGGUCCAa -3'
miRNA:   3'- gaCCAGG---------ACGACCAGGagGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 26268 0.79 0.213665
Target:  5'- aUGGUCCaGCaGGUCCUaCAGGUCCAg -3'
miRNA:   3'- gACCAGGaCGaCCAGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 28137 0.79 0.208717
Target:  5'- gUGGUCCUcCaGGUCCUCCAGGUUCu -3'
miRNA:   3'- gACCAGGAcGaCCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 22985 0.8 0.199118
Target:  5'- aCUGGUCCUGCuggugaugaUGGUgCUCCuGGUCCu -3'
miRNA:   3'- -GACCAGGACG---------ACCAgGAGGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 22911 0.8 0.185441
Target:  5'- aCUGGaCCUGCUGGUCCUgauGGUCCAa -3'
miRNA:   3'- -GACCaGGACGACCAGGAgguCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 222720 0.81 0.1726
Target:  5'- cCUGGUCCUGCUGGUUCgCCuGGUgCAa -3'
miRNA:   3'- -GACCAGGACGACCAGGaGGuCCAgGU- -5'
31678 5' -59.6 NC_006883.1 + 21540 0.81 0.159783
Target:  5'- cCUGGUCCUGCUGGcCCUCaaggugauguuGGUCCGa -3'
miRNA:   3'- -GACCAGGACGACCaGGAGgu---------CCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27257 0.83 0.132075
Target:  5'- -aGGUCCUacagGUggagaUGGUCCUCCAGGUCCAg -3'
miRNA:   3'- gaCCAGGA----CG-----ACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 28259 0.84 0.113003
Target:  5'- aCUGGUCCaacagGUccuucagguggaagUGGUCCUCCAGGUCCAc -3'
miRNA:   3'- -GACCAGGa----CG--------------ACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 26546 0.85 0.097997
Target:  5'- aCUGGUCCUGCUGGUCC-CCAagguguugcuGGUCUAg -3'
miRNA:   3'- -GACCAGGACGACCAGGaGGU----------CCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 26484 0.85 0.088611
Target:  5'- aUGGUCCUGCUggugcaacuGGUCCUgCAGGUCCAn -3'
miRNA:   3'- gACCAGGACGA---------CCAGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27383 0.86 0.084245
Target:  5'- -aGGUCCaGCaGGUCCUCCAGGUCCu -3'
miRNA:   3'- gaCCAGGaCGaCCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 27311 0.86 0.084245
Target:  5'- -aGGUCCaGCaGGUCCUCCAGGUCCu -3'
miRNA:   3'- gaCCAGGaCGaCCAGGAGGUCCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.