miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 222794 0.73 0.810274
Target:  5'- uGUUGGUCCUccaGGUCCuccUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27446 0.73 0.801633
Target:  5'- --aGGUCCUacUGGUCCGAcaGGUCCc -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28040 0.72 0.835242
Target:  5'- aCUGGUgaUGAUGGUCCuccaGGUCCu -3'
miRNA:   3'- cGACCAggACUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23144 0.72 0.85102
Target:  5'- aCUGGaCCaGAUGGUCCuacaGGUCCa -3'
miRNA:   3'- cGACCaGGaCUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 39371 0.71 0.900004
Target:  5'- -aUGGUgCUGGUGGUaaAGGUGGUUUc -3'
miRNA:   3'- cgACCAgGACUACCAggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21917 0.71 0.900004
Target:  5'- --aGGUCCuagUGGUGGUCC---UGGUCCn -3'
miRNA:   3'- cgaCCAGG---ACUACCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28082 0.71 0.887058
Target:  5'- aCUGGUCCUGcUGGUCCuccaGGaCCu -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 26275 0.71 0.887058
Target:  5'- aGCaGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23449 0.71 0.887058
Target:  5'- aGCaGGUCCUccaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 38986 0.7 0.906147
Target:  5'- aUUGGUaCUGGUGGU---AGUGGUCCu -3'
miRNA:   3'- cGACCAgGACUACCAgguUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26707 0.69 0.947147
Target:  5'- --aGGUCCUGcUGGUUCuccaGGUCCu -3'
miRNA:   3'- cgaCCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23433 0.69 0.946724
Target:  5'- cCUGGaCCUGGUGGaCCuguAGgaccaucUGGUCCa -3'
miRNA:   3'- cGACCaGGACUACCaGGu--UC-------ACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 134586 0.69 0.951257
Target:  5'- aCUGGUUCUGGUGGUgUAGGUGcaaCa -3'
miRNA:   3'- cGACCAGGACUACCAgGUUCACcagG- -5'
31679 3' -53.9 NC_006883.1 + 28109 0.68 0.971445
Target:  5'- cCUGGUgCUGAcggugaugaUGGgggAAGUGGUCCu -3'
miRNA:   3'- cGACCAgGACU---------ACCaggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28270 0.68 0.968591
Target:  5'- --aGGUCCUucaGGUGG---AAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGA---CUACCaggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22993 0.68 0.965539
Target:  5'- uGCUGGUgaUGAUGGUgCUcc-UGGUCCu -3'
miRNA:   3'- -CGACCAggACUACCA-GGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 110893 0.67 0.981818
Target:  5'- uGCUuaUCgUGGUGGuggcacaauuauagaUCCAAGUGGUUCu -3'
miRNA:   3'- -CGAccAGgACUACC---------------AGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27752 0.67 0.981013
Target:  5'- aGUUGGaCCUG-UGGgaCCAGuUGGUCCu -3'
miRNA:   3'- -CGACCaGGACuACCa-GGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 111238 0.67 0.976586
Target:  5'- uGUUGGUCCUGAuccUGGUUUAAGacuaucUGGauaaCCa -3'
miRNA:   3'- -CGACCAGGACU---ACCAGGUUC------ACCa---GG- -5'
31679 3' -53.9 NC_006883.1 + 47715 0.67 0.974108
Target:  5'- uCUGGUaCUGGuauugggucaaaUGGUUUAGGUGGUUCu -3'
miRNA:   3'- cGACCAgGACU------------ACCAGGUUCACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.