miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 28109 0.68 0.971445
Target:  5'- cCUGGUgCUGAcggugaugaUGGgggAAGUGGUCCu -3'
miRNA:   3'- cGACCAgGACU---------ACCaggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28082 0.71 0.887058
Target:  5'- aCUGGUCCUGcUGGUCCuccaGGaCCu -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 28040 0.72 0.835242
Target:  5'- aCUGGUgaUGAUGGUCCuccaGGUCCu -3'
miRNA:   3'- cGACCAggACUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28007 0.79 0.483213
Target:  5'- aCUGGUCCaggcgGAacUGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGa----CU--ACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27962 0.82 0.363214
Target:  5'- aCUGGUCCUGcUGGUCCuacuggugGAGaUGGUCCu -3'
miRNA:   3'- cGACCAGGACuACCAGG--------UUC-ACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27917 0.66 0.990587
Target:  5'- uGCUGGUgCUGAcggaagugaUGGUgCuauGGUggaacuGGUCCg -3'
miRNA:   3'- -CGACCAgGACU---------ACCAgGu--UCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27882 0.78 0.51996
Target:  5'- aCUGGUCCUucaggugGAacUGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGA-------CU--ACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27827 0.83 0.297738
Target:  5'- uGCUGGUCCUccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27752 0.67 0.981013
Target:  5'- aGUUGGaCCUG-UGGgaCCAGuUGGUCCu -3'
miRNA:   3'- -CGACCaGGACuACCa-GGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27480 0.76 0.669109
Target:  5'- aCUGGUCCcacaGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27446 0.73 0.801633
Target:  5'- --aGGUCCUacUGGUCCGAcaGGUCCc -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27355 0.74 0.747004
Target:  5'- -aUGGUUCUGAUGGuggaacugguacUCCAGGUccagcaGGUCCu -3'
miRNA:   3'- cgACCAGGACUACC------------AGGUUCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27274 0.87 0.194887
Target:  5'- -aUGGUCCUccaGGUCCAGGUGGUCCa -3'
miRNA:   3'- cgACCAGGAcuaCCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27219 0.74 0.747004
Target:  5'- cCUGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- cGACCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26800 0.66 0.986439
Target:  5'- aGUUGGaCCUGGUGGaCCAGcaGGaCCa -3'
miRNA:   3'- -CGACCaGGACUACCaGGUUcaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 26707 0.69 0.947147
Target:  5'- --aGGUCCUGcUGGUUCuccaGGUCCu -3'
miRNA:   3'- cgaCCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26572 0.66 0.984782
Target:  5'- uGCUGGUCUaGAuauUGGaacuucagcUCCAucUGGUCCu -3'
miRNA:   3'- -CGACCAGGaCU---ACC---------AGGUucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26527 0.8 0.42928
Target:  5'- uGCUGGUCCaccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26501 0.84 0.278044
Target:  5'- aCUGGUCCUGcaGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGACuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26404 0.73 0.810274
Target:  5'- --cGGUCCUccaGGUCCAGGUGGUg- -3'
miRNA:   3'- cgaCCAGGAcuaCCAGGUUCACCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.