Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 31679 | 3' | -53.9 | NC_006883.1 | + | 21659 | 0.8 | 0.42928 |
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Target: 5'- uGCUGGUCCaacaGGUCCAAcUGGUCCu -3' miRNA: 3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 26527 | 0.8 | 0.42928 |
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Target: 5'- uGCUGGUCCaccaGGUCCAAcUGGUCCu -3' miRNA: 3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 22947 | 0.8 | 0.438025 |
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Target: 5'- cCUGGUCCcc-UGGUCCugcuGGUGGUCCu -3' miRNA: 3'- cGACCAGGacuACCAGGu---UCACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 134586 | 0.69 | 0.951257 |
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Target: 5'- aCUGGUUCUGGUGGUgUAGGUGcaaCa -3' miRNA: 3'- cGACCAGGACUACCAgGUUCACcagG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 47715 | 0.67 | 0.974108 |
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Target: 5'- uCUGGUaCUGGuauugggucaaaUGGUUUAGGUGGUUCu -3' miRNA: 3'- cGACCAgGACU------------ACCAGGUUCACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 111238 | 0.67 | 0.976586 |
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Target: 5'- uGUUGGUCCUGAuccUGGUUUAAGacuaucUGGauaaCCa -3' miRNA: 3'- -CGACCAGGACU---ACCAGGUUC------ACCa---GG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 27752 | 0.67 | 0.981013 |
|
Target: 5'- aGUUGGaCCUG-UGGgaCCAGuUGGUCCu -3' miRNA: 3'- -CGACCaGGACuACCa-GGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 26800 | 0.66 | 0.986439 |
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Target: 5'- aGUUGGaCCUGGUGGaCCAGcaGGaCCa -3' miRNA: 3'- -CGACCaGGACUACCaGGUUcaCCaGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 188568 | 0.66 | 0.990587 |
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Target: 5'- uGCUGGUgCUGuaagagcaGUgCC-AGUGGUCCc -3' miRNA: 3'- -CGACCAgGACuac-----CA-GGuUCACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 23433 | 0.69 | 0.946724 |
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Target: 5'- cCUGGaCCUGGUGGaCCuguAGgaccaucUGGUCCa -3' miRNA: 3'- cGACCaGGACUACCaGGu--UC-------ACCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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