Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 31679 | 3' | -53.9 | NC_006883.1 | + | 27882 | 0.78 | 0.51996 |
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Target: 5'- aCUGGUCCUucaggugGAacUGGUCCAAcUGGUCCu -3' miRNA: 3'- cGACCAGGA-------CU--ACCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 21566 | 0.79 | 0.49252 |
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Target: 5'- uGUUGGUCCgagUGGUGGUCC---UGGUCCu -3' miRNA: 3'- -CGACCAGG---ACUACCAGGuucACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 21515 | 0.79 | 0.49252 |
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Target: 5'- --aGGUCCUucUGGUCCAGGUggcGGUCCu -3' miRNA: 3'- cgaCCAGGAcuACCAGGUUCA---CCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 28007 | 0.79 | 0.483213 |
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Target: 5'- aCUGGUCCaggcgGAacUGGUCCAAcUGGUCCu -3' miRNA: 3'- cGACCAGGa----CU--ACCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 28156 | 0.8 | 0.455817 |
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Target: 5'- --aGGUUCUGAUGGUUCugauggaggAAGUGGUCCu -3' miRNA: 3'- cgaCCAGGACUACCAGG---------UUCACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 222675 | 0.8 | 0.446872 |
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Target: 5'- cCUGGUCCUGcUGGUCCugcuGGUggaacuGGUCCa -3' miRNA: 3'- cGACCAGGACuACCAGGu---UCA------CCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 22947 | 0.8 | 0.438025 |
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Target: 5'- cCUGGUCCcc-UGGUCCugcuGGUGGUCCu -3' miRNA: 3'- cGACCAGGacuACCAGGu---UCACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 26527 | 0.8 | 0.42928 |
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Target: 5'- uGCUGGUCCaccaGGUCCAAcUGGUCCu -3' miRNA: 3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 21659 | 0.8 | 0.42928 |
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Target: 5'- uGCUGGUCCaacaGGUCCAAcUGGUCCu -3' miRNA: 3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5' |
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| 31679 | 3' | -53.9 | NC_006883.1 | + | 22919 | 1.14 | 0.004102 |
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Target: 5'- uGCUGGUCCUGAUGGUCCAAGUGGUCCu -3' miRNA: 3'- -CGACCAGGACUACCAGGUUCACCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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