miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 38986 0.7 0.906147
Target:  5'- aUUGGUaCUGGUGGU---AGUGGUCCu -3'
miRNA:   3'- cGACCAgGACUACCAgguUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 39371 0.71 0.900004
Target:  5'- -aUGGUgCUGGUGGUaaAGGUGGUUUc -3'
miRNA:   3'- cgACCAgGACUACCAggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21917 0.71 0.900004
Target:  5'- --aGGUCCuagUGGUGGUCC---UGGUCCn -3'
miRNA:   3'- cgaCCAGG---ACUACCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28082 0.71 0.887058
Target:  5'- aCUGGUCCUGcUGGUCCuccaGGaCCu -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 26275 0.71 0.887058
Target:  5'- aGCaGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23449 0.71 0.887058
Target:  5'- aGCaGGUCCUccaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23144 0.72 0.85102
Target:  5'- aCUGGaCCaGAUGGUCCuacaGGUCCa -3'
miRNA:   3'- cGACCaGGaCUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28040 0.72 0.835242
Target:  5'- aCUGGUgaUGAUGGUCCuccaGGUCCu -3'
miRNA:   3'- cGACCAggACUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 222794 0.73 0.810274
Target:  5'- uGUUGGUCCUccaGGUCCuccUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26404 0.73 0.810274
Target:  5'- --cGGUCCUccaGGUCCAGGUGGUg- -3'
miRNA:   3'- cgaCCAGGAcuaCCAGGUUCACCAgg -5'
31679 3' -53.9 NC_006883.1 + 27446 0.73 0.801633
Target:  5'- --aGGUCCUacUGGUCCGAcaGGUCCc -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 111966 0.74 0.774865
Target:  5'- --aGGUggUGGUGGUCCAGGUGGUa- -3'
miRNA:   3'- cgaCCAggACUACCAGGUUCACCAgg -5'
31679 3' -53.9 NC_006883.1 + 222720 0.74 0.756398
Target:  5'- cCUGGUCCUGcUGGUUCGccuGGUgcaacuGGUCCu -3'
miRNA:   3'- cGACCAGGACuACCAGGU---UCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27219 0.74 0.747004
Target:  5'- cCUGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- cGACCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27355 0.74 0.747004
Target:  5'- -aUGGUUCUGAUGGuggaacugguacUCCAGGUccagcaGGUCCu -3'
miRNA:   3'- cgACCAGGACUACC------------AGGUUCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21785 0.75 0.718278
Target:  5'- --aGGUCCaacUGGUCCugcuGGUGGUCCu -3'
miRNA:   3'- cgaCCAGGacuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27480 0.76 0.669109
Target:  5'- aCUGGUCCcacaGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28218 0.76 0.639197
Target:  5'- -aUGGUCCUccUGGUCCAGGUGGa-- -3'
miRNA:   3'- cgACCAGGAcuACCAGGUUCACCagg -5'
31679 3' -53.9 NC_006883.1 + 23650 0.76 0.639197
Target:  5'- aGCaGGUCCUacaGGUCCAAcUGGUCCa -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 222648 0.76 0.619217
Target:  5'- aCUGGUCCUGcUGGUCCuAcUGGUUCu -3'
miRNA:   3'- cGACCAGGACuACCAGGuUcACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.