miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 5' -59.8 NC_006883.1 + 21678 0.76 0.327838
Target:  5'- aCUGGUCCUcCUGGUacuggaucuccuGGUCCUgCAGGUc -3'
miRNA:   3'- -GACCAGGAcGACCA------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 222720 0.76 0.323622
Target:  5'- cCUGGUCCUGCUGGUucgccuggugcaacuGGUCCuguuggaaaUCCuGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGG---------AGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 21822 0.76 0.320834
Target:  5'- cCUGGUCCaa---GUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGacgacCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28164 0.76 0.313942
Target:  5'- aUGGUUCUGaUGGaggaagUGGUCCUCCAGGa -3'
miRNA:   3'- gACCAGGACgACC------ACCAGGAGGUCCa -5'
31679 5' -59.8 NC_006883.1 + 222684 0.76 0.313942
Target:  5'- gCUGGUCCUGCUGGUggaacuGGUCCacaAGGUu -3'
miRNA:   3'- -GACCAGGACGACCA------CCAGGaggUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27292 0.76 0.30315
Target:  5'- gUGGUCCaGgUGGUggcacagguccagcaGGUCCUCCAGGUc -3'
miRNA:   3'- gACCAGGaCgACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27257 0.77 0.293943
Target:  5'- -aGGUCCUacaGgUGGagaUGGUCCUCCAGGUc -3'
miRNA:   3'- gaCCAGGA---CgACC---ACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28250 0.77 0.293943
Target:  5'- aCUGGUCCaaCUGGUccaacaGGUCCUUCAGGUg -3'
miRNA:   3'- -GACCAGGacGACCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 24729 0.77 0.262844
Target:  5'- gUGGUCCUaGC-GGUccuccaGGUCCUCCAGGUc -3'
miRNA:   3'- gACCAGGA-CGaCCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 23059 0.79 0.215672
Target:  5'- -aGGUCCUGCUGGUucuccagguccaacuGGUCCUgUAGGUc -3'
miRNA:   3'- gaCCAGGACGACCA---------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22911 0.79 0.201007
Target:  5'- aCUGGaCCUGCUGGUccugaugguccaaguGGUCCUCCuGGUc -3'
miRNA:   3'- -GACCaGGACGACCA---------------CCAGGAGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 26519 0.8 0.187216
Target:  5'- aCUGGUCCUGCUGGUccaccagguccaacuGGUCCUgCuGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAgGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 27821 0.8 0.1726
Target:  5'- -aGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- gaCCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 222813 0.8 0.1726
Target:  5'- cCUGGUCCUGCUGGUGGUggaaCGGGUg -3'
miRNA:   3'- -GACCAGGACGACCACCAggagGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 26384 0.8 0.1726
Target:  5'- aCUGGUCCaaCUGGUccagacGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGacGACCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22884 0.83 0.125719
Target:  5'- aCUGGUCCUGCUGGUG---CUCCAGGUu -3'
miRNA:   3'- -GACCAGGACGACCACcagGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21747 0.83 0.12084
Target:  5'- aCUGGUCCUGCUGGUccuacggguccagacGGUCCUaCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22985 0.84 0.106705
Target:  5'- aCUGGUCCUGCuggugaugaUGGUgcuccugguccucaaGGUCCUCCAGGUa -3'
miRNA:   3'- -GACCAGGACG---------ACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28082 0.84 0.103035
Target:  5'- aCUGGUCCUGC---UGGUCCUCCAGGa -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCa -5'
31679 5' -59.8 NC_006883.1 + 222774 0.84 0.100486
Target:  5'- aCUGGUCCUuCUGGUGGUCCuguugguccUCCAGGUc -3'
miRNA:   3'- -GACCAGGAcGACCACCAGG---------AGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.