miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 26484 0.73 0.958626
Target:  5'- -aUGGUCCUGcuggugcaacuGGUCCUgCAGGUCCn -3'
miRNA:   3'- ugACCAGGACau---------CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 211655 0.73 0.955587
Target:  5'- cCUGGUCCaGgaugAGGUCCUUUAuuaccUCCu -3'
miRNA:   3'- uGACCAGGaCa---UCCAGGAAGUuu---AGG- -5'
31680 3' -49.7 NC_006883.1 + 27845 0.73 0.951581
Target:  5'- aACUGGUCCUacAGGaCCUaCAGGUCCn -3'
miRNA:   3'- -UGACCAGGAcaUCCaGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28125 0.74 0.922515
Target:  5'- gUUGGaCCUGUAGGUCCUgUAGGaCCa -3'
miRNA:   3'- uGACCaGGACAUCCAGGAaGUUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 23154 0.74 0.922515
Target:  5'- -aUGGUCCUacAGGUCCacCAGGUCCa -3'
miRNA:   3'- ugACCAGGAcaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28137 0.75 0.91088
Target:  5'- -gUGGUCCUccAGGUCCUcCAGGUUCu -3'
miRNA:   3'- ugACCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27383 0.75 0.904699
Target:  5'- --aGGUCCaGcAGGUCCUcCAGGUCCu -3'
miRNA:   3'- ugaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27308 0.75 0.891622
Target:  5'- cACaGGUCCaGcAGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 22919 0.76 0.862713
Target:  5'- uGCUGGUCCUGauGGUCCaaguGGUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23641 0.76 0.85494
Target:  5'- aACaGGUCCaGcAGGUCCUaCAGGUCCa -3'
miRNA:   3'- -UGaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222647 0.76 0.85494
Target:  5'- uACUGGUCCUGcuGGUCCUacugguUCuccuGGUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGA------AGu---UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27733 0.77 0.813128
Target:  5'- gUUGGUCCUGUGGGaCCUgUCGGA-CCa -3'
miRNA:   3'- uGACCAGGACAUCCaGGA-AGUUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 23047 0.77 0.80423
Target:  5'- aACUGGUCCUcaAGGUCCUgcugguucucCAGGUCCn -3'
miRNA:   3'- -UGACCAGGAcaUCCAGGAa---------GUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21866 0.78 0.785963
Target:  5'- uGCUGGUCCaagugGUucaccuGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGACCAGGa----CAu-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21822 0.78 0.785963
Target:  5'- cCUGGUCCaaguGGUCCUcCAGGUCCg -3'
miRNA:   3'- uGACCAGGacauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26268 0.78 0.757527
Target:  5'- -aUGGUCCaGcAGGUCCUaCAGGUCCa -3'
miRNA:   3'- ugACCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28081 0.78 0.757527
Target:  5'- aACUGGUCCUGcuGGUCCUcCAGGaccUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUU---AGG- -5'
31680 3' -49.7 NC_006883.1 + 23116 0.79 0.74781
Target:  5'- aACUGGUCCcacAGGUCCcaCAGGUCCa -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21933 0.79 0.737988
Target:  5'- cCUGGUCCUGcuGGUCCUcCAGGUCa -3'
miRNA:   3'- uGACCAGGACauCCAGGAaGUUUAGg -5'
31680 3' -49.7 NC_006883.1 + 27821 0.79 0.728072
Target:  5'- --aGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGACauCCAGGAaGUUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.