miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 5' -59.4 NC_006883.1 + 28137 0.76 0.348534
Target:  5'- gUGGUCCUcCAGGUCCUcCAGGUUCu -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 26393 0.76 0.334034
Target:  5'- aCUGGUCCagAC-GGUCCUcCAGGUCCAg -3'
miRNA:   3'- -GACCAGGg-UGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 222675 0.76 0.326951
Target:  5'- cCUGGUCCUGCuGGUCCUGCugguggaacuGGUCCAc -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGu---------CCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21660 0.77 0.313122
Target:  5'- gCUGGUCCaACAGGUCCaACuGGUCCu -3'
miRNA:   3'- -GACCAGGgUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 222765 0.77 0.313122
Target:  5'- cCUGGUCCUACuGGUCCUucuGguGGUCCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGG---UguCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 23084 0.77 0.293217
Target:  5'- aCUGGUCCUGUAGGUCCUucaaaucCAGGUCCAn -3'
miRNA:   3'- -GACCAGGGUGUCCAGGGu------GUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28250 0.77 0.293217
Target:  5'- aCUGGUCCaACuGGUCCaACAGGUCCu -3'
miRNA:   3'- -GACCAGGgUGuCCAGGgUGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 27257 0.77 0.293217
Target:  5'- -aGGUCCUACAgguggagauGGUCCUcCAGGUCCAg -3'
miRNA:   3'- gaCCAGGGUGU---------CCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27990 0.77 0.286805
Target:  5'- aUGGUCCUcCAGGUCCaACuGGUCCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGGgUGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21933 0.77 0.286805
Target:  5'- cCUGGUCCUGCuGGUCCUcCAGGUCa- -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCAGgu -5'
31680 5' -59.4 NC_006883.1 + 21822 0.78 0.274314
Target:  5'- cCUGGUCCaAguGGUCCUcCAGGUCCGa -3'
miRNA:   3'- -GACCAGGgUguCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21885 0.78 0.262262
Target:  5'- cCUGGUCCUcCAGGUCCUAguggugguccucCAGGUCCu -3'
miRNA:   3'- -GACCAGGGuGUCCAGGGU------------GUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 222648 0.78 0.256399
Target:  5'- aCUGGUCCUGCuGGUCCUACuGGUUCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21504 0.79 0.228685
Target:  5'- uCUGGUCCUcCAGGUCCUuCuGGUCCAg -3'
miRNA:   3'- -GACCAGGGuGUCCAGGGuGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27821 0.79 0.223455
Target:  5'- -aGGUCCUGCuGGUCCUcCAGGUCCAn -3'
miRNA:   3'- gaCCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27311 0.79 0.218327
Target:  5'- -aGGUCCaGCAGGUCCUcCAGGUCCu -3'
miRNA:   3'- gaCCAGGgUGUCCAGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 27383 0.79 0.218327
Target:  5'- -aGGUCCaGCAGGUCCUcCAGGUCCu -3'
miRNA:   3'- gaCCAGGgUGUCCAGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 27953 0.8 0.213301
Target:  5'- aCUGGUCCgACuGGUCCUGCuGGUCCu -3'
miRNA:   3'- -GACCAGGgUGuCCAGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21776 0.8 0.208374
Target:  5'- -cGGUCCUACAGGUCCaACuGGUCCu -3'
miRNA:   3'- gaCCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21612 0.81 0.185193
Target:  5'- cCUGGUCCUGCugguGGUCCUcCAGGUCCGc -3'
miRNA:   3'- -GACCAGGGUGu---CCAGGGuGUCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.