miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 28559 0.68 0.834143
Target:  5'- -cUGGUGGACCUGGaggaccacuUCCaccugaaggaccUGUUGGaCCa -3'
miRNA:   3'- ccACCACCUGGACC---------AGG------------ACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 112047 0.69 0.809893
Target:  5'- uGGUGGUGGuCaagguggUGGUUCUGCUGcaaGUUCu -3'
miRNA:   3'- -CCACCACCuGg------ACCAGGACGAC---CAGG- -5'
31681 3' -58.2 NC_006883.1 + 39870 0.69 0.801511
Target:  5'- aGGUagaGGUGGugCuggugguaaUGGUgCUGCUGGuguUCCu -3'
miRNA:   3'- -CCA---CCACCugG---------ACCAgGACGACC---AGG- -5'
31681 3' -58.2 NC_006883.1 + 27847 0.69 0.784343
Target:  5'- -cUGGUccuacaGGACCUacaGGUCCaaCUGGUCCa -3'
miRNA:   3'- ccACCA------CCUGGA---CCAGGacGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27201 0.69 0.784343
Target:  5'- aGUGGUccgcaaGGugcuCCUGGUCCUaCaGGUCCa -3'
miRNA:   3'- cCACCA------CCu---GGACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21479 0.7 0.766686
Target:  5'- aGGUccaacUGGAauaaCUGGUCCUuCUGGUCCu -3'
miRNA:   3'- -CCAcc---ACCUg---GACCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27365 0.7 0.757692
Target:  5'- uGGUGGaacUGGuacuCCaGGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACC---ACCu---GGaCCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23629 0.7 0.757692
Target:  5'- aGGUGuUGGAUCaacaGGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACcACCUGGa---CCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27266 0.7 0.748599
Target:  5'- --aGGUGGAgaUGGUCCUcCaGGUCCa -3'
miRNA:   3'- ccaCCACCUggACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 28279 0.7 0.739415
Target:  5'- --aGGUGGAagUGGUCCUcCaGGUCCa -3'
miRNA:   3'- ccaCCACCUggACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 186910 0.71 0.71139
Target:  5'- aGGUGGUGGACa---UUCUaCUGGUCCu -3'
miRNA:   3'- -CCACCACCUGgaccAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 22868 0.71 0.692392
Target:  5'- aGGUGcuccaGGuccaaCUGGUCCUGCUGGUgCu -3'
miRNA:   3'- -CCACca---CCug---GACCAGGACGACCAgG- -5'
31681 3' -58.2 NC_006883.1 + 23426 0.71 0.663576
Target:  5'- -cUGGUGGACCuguaggaccaucUGGUCCaGUUGGaCCu -3'
miRNA:   3'- ccACCACCUGG------------ACCAGGaCGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 40036 0.71 0.663576
Target:  5'- -aUGGUGGACagcaUGGuucUCCUGgUGGUUCu -3'
miRNA:   3'- ccACCACCUGg---ACC---AGGACgACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21876 0.72 0.634555
Target:  5'- aGUGGUucACCUGGUCCUcCaGGUCCu -3'
miRNA:   3'- cCACCAccUGGACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27982 0.72 0.624868
Target:  5'- uGGUGGagaUGGuCCUccaGGUCCaaCUGGUCCa -3'
miRNA:   3'- -CCACC---ACCuGGA---CCAGGacGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 159166 0.73 0.595865
Target:  5'- aGUGGUGGAUaUGuUCCUGCUGGauuuucUCCu -3'
miRNA:   3'- cCACCACCUGgACcAGGACGACC------AGG- -5'
31681 3' -58.2 NC_006883.1 + 222748 0.73 0.595865
Target:  5'- -cUGGUccuguuGGAaauCCUGGUCCUaCUGGUCCu -3'
miRNA:   3'- ccACCA------CCU---GGACCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 22904 0.73 0.586237
Target:  5'- aGGUuuaacUGGACCugcUGGUCCUGaUGGUCCa -3'
miRNA:   3'- -CCAcc---ACCUGG---ACCAGGACgACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23731 0.73 0.586237
Target:  5'- aGGaGGaccugcUGGACCUGGaggaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGACCa---GGACGACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.