miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 5' -59.6 NC_006883.1 + 186835 0.66 0.870834
Target:  5'- -aGGUgCAGguGGUUCUCCAGuaUCAa -3'
miRNA:   3'- gaCCAgGUCguCCAGGAGGUCcaGGU- -5'
31681 5' -59.6 NC_006883.1 + 155482 0.66 0.863748
Target:  5'- aUGG-CUAGCAGuGUCCUCC---UCCAa -3'
miRNA:   3'- gACCaGGUCGUC-CAGGAGGuccAGGU- -5'
31681 5' -59.6 NC_006883.1 + 26793 0.66 0.856473
Target:  5'- cCUGGUggaCCAGCAGGaccaguuggaCCUgCAGGaCCAg -3'
miRNA:   3'- -GACCA---GGUCGUCCa---------GGAgGUCCaGGU- -5'
31681 5' -59.6 NC_006883.1 + 162721 0.66 0.849016
Target:  5'- ---uUCUGGCAGGUgCUCCAGGaUCAg -3'
miRNA:   3'- gaccAGGUCGUCCAgGAGGUCCaGGU- -5'
31681 5' -59.6 NC_006883.1 + 23189 0.66 0.849016
Target:  5'- uUGGaCCAuCAGGaCCagCAGGUCCAg -3'
miRNA:   3'- gACCaGGUcGUCCaGGagGUCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 111974 0.66 0.84826
Target:  5'- gUGGUCCAGguGGUaaaCacggugguaggggUCCAGGUgCu -3'
miRNA:   3'- gACCAGGUCguCCAg--G-------------AGGUCCAgGu -5'
31681 5' -59.6 NC_006883.1 + 22847 0.67 0.800755
Target:  5'- uUGGagaagaauUCCcgaucCAGGUgCUCCAGGUCCAn -3'
miRNA:   3'- gACC--------AGGuc---GUCCAgGAGGUCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 21859 0.67 0.800755
Target:  5'- aUGGUCCuGCuGGUCCaagugguucaCCuGGUCCu -3'
miRNA:   3'- gACCAGGuCGuCCAGGa---------GGuCCAGGu -5'
31681 5' -59.6 NC_006883.1 + 184811 0.67 0.788725
Target:  5'- -aGGUUCAacaauaccauauuCAGGUCCUCCuGGUUCAa -3'
miRNA:   3'- gaCCAGGUc------------GUCCAGGAGGuCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 21057 0.68 0.774672
Target:  5'- aCUaGUCCAGCAGuUCCUUCuGGUCa- -3'
miRNA:   3'- -GAcCAGGUCGUCcAGGAGGuCCAGgu -5'
31681 5' -59.6 NC_006883.1 + 28007 0.68 0.765737
Target:  5'- aCUGGUCCAgGCGgaacuGGUCCaaCuGGUCCu -3'
miRNA:   3'- -GACCAGGU-CGU-----CCAGGagGuCCAGGu -5'
31681 5' -59.6 NC_006883.1 + 26350 0.68 0.73832
Target:  5'- -aGGUCCAaCuGGUCCUgCuGGUCCc -3'
miRNA:   3'- gaCCAGGUcGuCCAGGAgGuCCAGGu -5'
31681 5' -59.6 NC_006883.1 + 28124 0.68 0.729003
Target:  5'- uUGGaCCuGUAGGUCCUgUAGGaCCAg -3'
miRNA:   3'- gACCaGGuCGUCCAGGAgGUCCaGGU- -5'
31681 5' -59.6 NC_006883.1 + 222702 0.69 0.710151
Target:  5'- aCUGGUCCAcaAGGUUCaCCuGGUCCu -3'
miRNA:   3'- -GACCAGGUcgUCCAGGaGGuCCAGGu -5'
31681 5' -59.6 NC_006883.1 + 23331 0.69 0.700631
Target:  5'- cCUGGagaaCCAGCAGGaCCUUgAGGaCCAg -3'
miRNA:   3'- -GACCa---GGUCGUCCaGGAGgUCCaGGU- -5'
31681 5' -59.6 NC_006883.1 + 23688 0.7 0.632961
Target:  5'- cCUGGaggaCCAGCAGGa---CCAGGUCCAc -3'
miRNA:   3'- -GACCa---GGUCGUCCaggaGGUCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 28208 0.7 0.613514
Target:  5'- aCUGGUggAGauGGUCCUCCuGGUCCAg -3'
miRNA:   3'- -GACCAggUCguCCAGGAGGuCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 21522 0.71 0.565225
Target:  5'- uCUGGUCCAGguGGcggUCCuGGUCCu -3'
miRNA:   3'- -GACCAGGUCguCCaggAGGuCCAGGu -5'
31681 5' -59.6 NC_006883.1 + 27846 0.71 0.565225
Target:  5'- aCUGGUCCuaCAGGaCCUaCAGGUCCAn -3'
miRNA:   3'- -GACCAGGucGUCCaGGAgGUCCAGGU- -5'
31681 5' -59.6 NC_006883.1 + 26546 0.71 0.555672
Target:  5'- aCUGGUCCuGCuGGUCC-CCAagguguugcuGGUCUAg -3'
miRNA:   3'- -GACCAGGuCGuCCAGGaGGU----------CCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.