miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 3' -51.5 NC_006883.1 + 28234 0.7 0.964474
Target:  5'- aGGUGGaacUGGUCC-GaCUGGUcCAACUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGaC-GACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 39254 0.7 0.957409
Target:  5'- -cUAAUGGUUCUGUaGGUGguGgUGGa -3'
miRNA:   3'- ucAUUACCAGGACGaCCACguUgACC- -5'
31682 3' -51.5 NC_006883.1 + 112088 0.71 0.953539
Target:  5'- -cUGGUGGUagccuuUCUGCUGGUGguGgUGGa -3'
miRNA:   3'- ucAUUACCA------GGACGACCACguUgACC- -5'
31682 3' -51.5 NC_006883.1 + 23407 0.71 0.944659
Target:  5'- uGGUGGaccUGGUCCUGCUGGUccuccagGUccauCUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGACGACCA-------CGuu--GACC- -5'
31682 3' -51.5 NC_006883.1 + 22482 0.72 0.930678
Target:  5'- -uUAGUGGUUCUGCUGauaGUGCAAgUGu -3'
miRNA:   3'- ucAUUACCAGGACGAC---CACGUUgACc -5'
31682 3' -51.5 NC_006883.1 + 230296 0.72 0.930678
Target:  5'- uAGUAAcuaaGGUCCaauuUGCUGGUGUugUUGGg -3'
miRNA:   3'- -UCAUUa---CCAGG----ACGACCACGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 21575 0.72 0.922098
Target:  5'- gAGUGGUGGUCCugguccuacuggaccUGCUGGUcCucCUGGu -3'
miRNA:   3'- -UCAUUACCAGG---------------ACGACCAcGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 37462 0.72 0.919857
Target:  5'- uGGUGGUGGaUCUGCUGGUauuaauACUGGa -3'
miRNA:   3'- -UCAUUACCaGGACGACCAcgu---UGACC- -5'
31682 3' -51.5 NC_006883.1 + 27821 0.73 0.895342
Target:  5'- -----aGGUCCUGCUGGUccuccaggucCAACUGGu -3'
miRNA:   3'- ucauuaCCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 194103 0.73 0.895342
Target:  5'- uGGuUGGUGGUgCUGCUGGUG-GAgUGGg -3'
miRNA:   3'- -UC-AUUACCAgGACGACCACgUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 222814 0.73 0.888626
Target:  5'- ----cUGGUCCUGCUGGUGguggaaCGGgUGGa -3'
miRNA:   3'- ucauuACCAGGACGACCAC------GUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 23038 0.73 0.87741
Target:  5'- cGGUGGUccaacugguccucaaGGUCCUGCUGGUucuccaggucCAACUGGu -3'
miRNA:   3'- -UCAUUA---------------CCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 112290 0.73 0.874516
Target:  5'- uGGUGGcGGUCCaGCugaUGGUGguACUGGu -3'
miRNA:   3'- -UCAUUaCCAGGaCG---ACCACguUGACC- -5'
31682 3' -51.5 NC_006883.1 + 192110 0.74 0.859533
Target:  5'- nGUAagGGUaaUGCUGGUGUuGCUGGu -3'
miRNA:   3'- uCAUuaCCAggACGACCACGuUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21967 0.74 0.83552
Target:  5'- aAGUGGuccuccUGGUCCugcuggaucUGCUGGUGCGauaccuGCUGGu -3'
miRNA:   3'- -UCAUU------ACCAGG---------ACGACCACGU------UGACC- -5'
31682 3' -51.5 NC_006883.1 + 26520 0.74 0.827133
Target:  5'- ----cUGGUCCUGCUGGUccaccaggucCAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26358 0.75 0.818567
Target:  5'- ----cUGGUCCUGCUGGUcccacagguGgAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCA---------CgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 173023 0.75 0.818567
Target:  5'- --gGGUGGUaCUGCUGGUGCuucuuuaggAACUGGu -3'
miRNA:   3'- ucaUUACCAgGACGACCACG---------UUGACC- -5'
31682 3' -51.5 NC_006883.1 + 220479 0.75 0.809831
Target:  5'- uAGuUGGUGGUgUUGCUGGUGgUAAUUGGg -3'
miRNA:   3'- -UC-AUUACCAgGACGACCAC-GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 112172 0.75 0.791879
Target:  5'- -aUGGUGGUUCUGCuaauggUGGUGgAGCUGGc -3'
miRNA:   3'- ucAUUACCAGGACG------ACCACgUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.