miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 27492 0.83 0.186161
Target:  5'- gGUCCAACUGGUCCUGCUGGagCAa-- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCagGUggu -5'
31682 5' -57.1 NC_006883.1 + 27594 0.67 0.903387
Target:  5'- uUCCAGgaggacCUGGaggaCCUGCUGGaccugugCCACCAc -3'
miRNA:   3'- cAGGUU------GACCa---GGACGACCa------GGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27666 0.67 0.893358
Target:  5'- uUCCAGgaggacCUGGaggaCCUGCUGGaccuggaguaccaguUCCACCAu -3'
miRNA:   3'- cAGGUU------GACCa---GGACGACC---------------AGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27812 0.74 0.528742
Target:  5'- aUCaGAUUuaGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- cAGgUUGA--CCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 27867 0.8 0.278128
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCuuCAg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 27903 0.85 0.135013
Target:  5'- gGUCCAACUGGUCCUGCUGGUgCugaCGg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAgGug-GU- -5'
31682 5' -57.1 NC_006883.1 + 27956 0.95 0.028318
Target:  5'- gGUCCGACUGGUCCUGCUGGUCCuACUg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 28025 0.78 0.355027
Target:  5'- gGUCCAACUGGUCCUacugGUgaugaUGGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 28070 0.91 0.057791
Target:  5'- gGUCCAggcggaACUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGU------UGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 28244 0.8 0.265661
Target:  5'- gGUCCGACUGGUCCaaCUGGUCCAaCAg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 28271 0.7 0.780752
Target:  5'- gGUCCuucagguggAAgUGGUCCUcCaGGUCCACCAg -3'
miRNA:   3'- -CAGG---------UUgACCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 28366 0.68 0.870237
Target:  5'- -aCCAGgaGGUCCUGgaGGaCCAgCAg -3'
miRNA:   3'- caGGUUgaCCAGGACgaCCaGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 31571 0.71 0.695875
Target:  5'- uUCCAccuaaucuaaaaGCUGGUCCUGCUGGUggAUUAa -3'
miRNA:   3'- cAGGU------------UGACCAGGACGACCAggUGGU- -5'
31682 5' -57.1 NC_006883.1 + 38578 0.67 0.890764
Target:  5'- -aCCGAaauaUGGUCCUGCcuUGGUUaCACUAa -3'
miRNA:   3'- caGGUUg---ACCAGGACG--ACCAG-GUGGU- -5'
31682 5' -57.1 NC_006883.1 + 39727 0.69 0.786117
Target:  5'- cUCCAugUGauauugauaaUGCUGGUCCACCAu -3'
miRNA:   3'- cAGGUugACcagg------ACGACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 222645 0.77 0.378444
Target:  5'- -aCU-ACUGGUCCUGCUGGUCCuACUn -3'
miRNA:   3'- caGGuUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 222669 0.84 0.149196
Target:  5'- gGUUCucCUGGUCCUGCUGGUCCugCu -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCAGGugGu -5'
31682 5' -57.1 NC_006883.1 + 222714 0.87 0.099601
Target:  5'- gGUUCAcCUGGUCCUGCUGGUUCGCCu -3'
miRNA:   3'- -CAGGUuGACCAGGACGACCAGGUGGu -5'
31682 5' -57.1 NC_006883.1 + 222741 0.73 0.567472
Target:  5'- gGUgCAACUGGUCCUGUUGGaaaUCCugguCCu -3'
miRNA:   3'- -CAgGUUGACCAGGACGACC---AGGu---GGu -5'
31682 5' -57.1 NC_006883.1 + 222777 0.8 0.259598
Target:  5'- gGUCCuucuGgUGGUCCUGUUGGUCCuCCAg -3'
miRNA:   3'- -CAGGu---UgACCAGGACGACCAGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.