miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 21453 0.93 0.042147
Target:  5'- gGUCCuACUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGuUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26351 0.94 0.036926
Target:  5'- gGUCCAACUGGUCCUGCUGGUcCCACa- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCA-GGUGgu -5'
31682 5' -57.1 NC_006883.1 + 27956 0.95 0.028318
Target:  5'- gGUCCGACUGGUCCUGCUGGUCCuACUg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 21741 0.96 0.026144
Target:  5'- gGUCCAACUGGUCCUGCUGGUCCuacggguCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 26540 1 0.014525
Target:  5'- gGUCCAACUGGUCCUGCUGGUCC-CCAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 27492 0.83 0.186161
Target:  5'- gGUCCAACUGGUCCUGCUGGagCAa-- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCagGUggu -5'
31682 5' -57.1 NC_006883.1 + 23042 0.81 0.220283
Target:  5'- gGUCCAACUGGUCCucaagguccUGCUGGUUCuCCAn -3'
miRNA:   3'- -CAGGUUGACCAGG---------ACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 222645 0.77 0.378444
Target:  5'- -aCU-ACUGGUCCUGCUGGUCCuACUn -3'
miRNA:   3'- caGGuUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 21843 0.77 0.370524
Target:  5'- gGUCCGAgugguggagaUGGUCCUGCUGGUCCAa-- -3'
miRNA:   3'- -CAGGUUg---------ACCAGGACGACCAGGUggu -5'
31682 5' -57.1 NC_006883.1 + 28025 0.78 0.355027
Target:  5'- gGUCCAACUGGUCCUacugGUgaugaUGGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21672 0.78 0.332651
Target:  5'- gGUCCAACUGGUCCUccugGUacuggaucuccUGGUCCugCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----------ACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 21480 0.78 0.325426
Target:  5'- gGUCCAacuggaauaACUGGUCCUuCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGU---------UGACCAGGAcGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 22905 0.78 0.325426
Target:  5'- gGUUUAACUGGaCCUGCUGGUCCugaugguCCAa -3'
miRNA:   3'- -CAGGUUGACCaGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 23409 0.79 0.304454
Target:  5'- -gUgGAcCUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- caGgUU-GACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 27867 0.8 0.278128
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCuuCAg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 23663 0.8 0.271837
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCgACUg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 28244 0.8 0.265661
Target:  5'- gGUCCGACUGGUCCaaCUGGUCCAaCAg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 222777 0.8 0.259598
Target:  5'- gGUCCuucuGgUGGUCCUGUUGGUCCuCCAg -3'
miRNA:   3'- -CAGGu---UgACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21962 0.81 0.236473
Target:  5'- gGUCCAAgUGGUCCUcCUGGUCCugCu -3'
miRNA:   3'- -CAGGUUgACCAGGAcGACCAGGugGu -5'
31682 5' -57.1 NC_006883.1 + 21588 0.81 0.230969
Target:  5'- gGUCCuACUGGaCCUGCUGGUCCuCCu -3'
miRNA:   3'- -CAGGuUGACCaGGACGACCAGGuGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.