miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 26270 0.73 0.616794
Target:  5'- gGUCCAGCaGGUCCUaCaGGUCCAgCAg -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 26714 0.73 0.581208
Target:  5'- uUCCAGgaGGaCCUGCUGGaccuggaguaccaguUCCACCAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACC---------------AGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 222741 0.73 0.567472
Target:  5'- gGUgCAACUGGUCCUGUUGGaaaUCCugguCCu -3'
miRNA:   3'- -CAgGUUGACCAGGACGACC---AGGu---GGu -5'
31682 5' -57.1 NC_006883.1 + 27812 0.74 0.528742
Target:  5'- aUCaGAUUuaGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- cAGgUUGA--CCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21525 0.74 0.519207
Target:  5'- gGUCCAGguggcggucCUGGUCCUGCUGGcCC-UCAa -3'
miRNA:   3'- -CAGGUU---------GACCAGGACGACCaGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26387 0.75 0.463583
Target:  5'- gGUCCAACUGGUCCaGaC-GGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGaC-GaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 27231 0.76 0.43696
Target:  5'- gGUCCAGCaGGUCCUaCaGGUCCAUCAg -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 22950 0.76 0.419708
Target:  5'- gGUCCc-CUGGUCCUGCuggUGGUCCuCCAn -3'
miRNA:   3'- -CAGGuuGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23435 0.76 0.411238
Target:  5'- gGUCCAuCUGGUCCaGCaGGUCCuCCAg -3'
miRNA:   3'- -CAGGUuGACCAGGaCGaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23138 0.76 0.411238
Target:  5'- gGUCCAACuggaccagaUGGUCCUaCaGGUCCACCAg -3'
miRNA:   3'- -CAGGUUG---------ACCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 24722 0.77 0.402875
Target:  5'- gGUCCAAgUGGUCCUaGC-GGUCCuCCAg -3'
miRNA:   3'- -CAGGUUgACCAGGA-CGaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 222645 0.77 0.378444
Target:  5'- -aCU-ACUGGUCCUGCUGGUCCuACUn -3'
miRNA:   3'- caGGuUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 21843 0.77 0.370524
Target:  5'- gGUCCGAgugguggagaUGGUCCUGCUGGUCCAa-- -3'
miRNA:   3'- -CAGGUUg---------ACCAGGACGACCAGGUggu -5'
31682 5' -57.1 NC_006883.1 + 28025 0.78 0.355027
Target:  5'- gGUCCAACUGGUCCUacugGUgaugaUGGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21672 0.78 0.332651
Target:  5'- gGUCCAACUGGUCCUccugGUacuggaucuccUGGUCCugCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----------ACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 22905 0.78 0.325426
Target:  5'- gGUUUAACUGGaCCUGCUGGUCCugaugguCCAa -3'
miRNA:   3'- -CAGGUUGACCaGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 21480 0.78 0.325426
Target:  5'- gGUCCAacuggaauaACUGGUCCUuCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGU---------UGACCAGGAcGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23409 0.79 0.304454
Target:  5'- -gUgGAcCUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- caGgUU-GACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 27867 0.8 0.278128
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCuuCAg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 23663 0.8 0.271837
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCgACUg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGG-UGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.