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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 23725 | 0.67 | 0.970963 |
Target: 5'- aCCuGCuGGaCCUGgAGGACCuGCUGGa -3' miRNA: 3'- -GGcUGuCCaGGGUgUCCUGGuUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27878 | 0.67 | 0.970963 |
Target: 5'- uCCaACuGGUCCUuCAGGuggaacugguCCAACUGGu -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCu---------GGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 26429 | 0.67 | 0.961911 |
Target: 5'- aCUGGuacucCAGGUCCaGCAGGuCCucCUGGa -3' miRNA: 3'- -GGCU-----GUCCAGGgUGUCCuGGuuGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 26398 | 0.67 | 0.958501 |
Target: 5'- uCCaGAC-GGUCCUcCAGGuCCAGgUGGu -3' miRNA: 3'- -GG-CUGuCCAGGGuGUCCuGGUUgACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 222950 | 0.67 | 0.958501 |
Target: 5'- aCCaGCAGGaCCaGCAGGACCAGgaGa -3' miRNA: 3'- -GGcUGUCCaGGgUGUCCUGGUUgaCc -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21973 | 0.66 | 0.976067 |
Target: 5'- uCCucCuGGUCCUGCuGGAUCuGCUGGu -3' miRNA: 3'- -GGcuGuCCAGGGUGuCCUGGuUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 22069 | 0.66 | 0.984257 |
Target: 5'- aCCuGgAGGaCCaccaGCAGGACCAGUUGGa -3' miRNA: 3'- -GGcUgUCCaGGg---UGUCCUGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21827 | 0.66 | 0.980481 |
Target: 5'- uCCaAguGGUCCUcCAGGuCCGAgUGGu -3' miRNA: 3'- -GGcUguCCAGGGuGUCCuGGUUgACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 23419 | 0.66 | 0.978357 |
Target: 5'- uCCuGCuGGUCCUcCAGGuCCAuCUGGn -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCuGGUuGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 22143 | 0.66 | 0.973604 |
Target: 5'- -gGAcCAGGUgaaCCACuuGGACCAGCaGGa -3' miRNA: 3'- ggCU-GUCCAg--GGUGu-CCUGGUUGaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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