miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 23419 0.66 0.978357
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAuCUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUuGACC- -5'
31683 3' -55.4 NC_006883.1 + 23446 0.74 0.724317
Target:  5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 23647 0.9 0.113854
Target:  5'- uCCaGCAGGUCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23725 0.67 0.970963
Target:  5'- aCCuGCuGGaCCUGgAGGACCuGCUGGa -3'
miRNA:   3'- -GGcUGuCCaGGGUgUCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 24679 0.79 0.440269
Target:  5'- uCCucCAGGUCCUACAGGuCCAAgUGGu -3'
miRNA:   3'- -GGcuGUCCAGGGUGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 24742 0.71 0.853394
Target:  5'- uCCucCAGGUCCUcCAGGuCCAACaGGa -3'
miRNA:   3'- -GGcuGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 26272 0.81 0.336818
Target:  5'- uCCaGCAGGUCCUACAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 26362 0.79 0.431681
Target:  5'- uCCuGCuGGUCCCACAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGUGUCCu---------GGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26398 0.67 0.958501
Target:  5'- uCCaGAC-GGUCCUcCAGGuCCAGgUGGu -3'
miRNA:   3'- -GG-CUGuCCAGGGuGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 26429 0.67 0.961911
Target:  5'- aCUGGuacucCAGGUCCaGCAGGuCCucCUGGa -3'
miRNA:   3'- -GGCU-----GUCCAGGgUGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 26498 0.77 0.549955
Target:  5'- gCaACuGGUCCUGCAGGuCCAACUGGu -3'
miRNA:   3'- gGcUGuCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26524 0.71 0.838066
Target:  5'- uCCuGCuGGUCCaC-CAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGG-GuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27233 0.74 0.714837
Target:  5'- uCCaGCAGGUCCUACAGGuCCAuCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUuGaCC- -5'
31683 3' -55.4 NC_006883.1 + 27314 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27386 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27458 1.12 0.004704
Target:  5'- uCCGACAGGUCCCACAGGACCAACUGGu -3'
miRNA:   3'- -GGCUGUCCAGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27483 0.73 0.75229
Target:  5'- ------nGUCCCACAGGuCCAACUGGu -3'
miRNA:   3'- ggcugucCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27824 0.74 0.714837
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27851 0.8 0.390262
Target:  5'- uCCuACAGGaCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCaGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27878 0.67 0.970963
Target:  5'- uCCaACuGGUCCUuCAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCu---------GGUUGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.