miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 26429 0.67 0.961911
Target:  5'- aCUGGuacucCAGGUCCaGCAGGuCCucCUGGa -3'
miRNA:   3'- -GGCU-----GUCCAGGgUGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 26398 0.67 0.958501
Target:  5'- uCCaGAC-GGUCCUcCAGGuCCAGgUGGu -3'
miRNA:   3'- -GG-CUGuCCAGGGuGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 26362 0.79 0.431681
Target:  5'- uCCuGCuGGUCCCACAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGUGUCCu---------GGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26272 0.81 0.336818
Target:  5'- uCCaGCAGGUCCUACAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 24742 0.71 0.853394
Target:  5'- uCCucCAGGUCCUcCAGGuCCAACaGGa -3'
miRNA:   3'- -GGcuGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 24679 0.79 0.440269
Target:  5'- uCCucCAGGUCCUACAGGuCCAAgUGGu -3'
miRNA:   3'- -GGcuGUCCAGGGUGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 23725 0.67 0.970963
Target:  5'- aCCuGCuGGaCCUGgAGGACCuGCUGGa -3'
miRNA:   3'- -GGcUGuCCaGGGUgUCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23647 0.9 0.113854
Target:  5'- uCCaGCAGGUCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23446 0.74 0.724317
Target:  5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 23419 0.66 0.978357
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAuCUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUuGACC- -5'
31683 3' -55.4 NC_006883.1 + 23364 0.72 0.822055
Target:  5'- cCUGGauuugaAGGaCCUACAGGACCAGUUGGa -3'
miRNA:   3'- -GGCUg-----UCCaGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23323 0.75 0.627553
Target:  5'- aCCaGCAGGaCCUugAGGACCAGUUGGa -3'
miRNA:   3'- -GGcUGUCCaGGGugUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23176 0.69 0.920471
Target:  5'- aCCaGCAGGUCCaguUaaaccuggagcaccaGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGcUGUCCAGG---G---------------UGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23122 0.94 0.060284
Target:  5'- uCCcACAGGUCCCACAGGuCCAACUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23090 0.69 0.912762
Target:  5'- cCUG-UAGGUCCUucaaaucCAGGuCCAACUGGn -3'
miRNA:   3'- -GGCuGUCCAGGGu------GUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23062 0.7 0.901016
Target:  5'- uCCuGCuGGUUCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22960 0.72 0.805413
Target:  5'- uCCuGCugguGGUCCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGu---CCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22860 0.75 0.656879
Target:  5'- cCCGAucCAGGUgCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGCU--GUCCAgGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22252 0.7 0.88842
Target:  5'- aCCaGCAGaUCCaGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGcUGUCcAGGgUGUCCUGGUUgaCC- -5'
31683 3' -55.4 NC_006883.1 + 22143 0.66 0.973604
Target:  5'- -gGAcCAGGUgaaCCACuuGGACCAGCaGGa -3'
miRNA:   3'- ggCU-GUCCAg--GGUGu-CCUGGUUGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.