Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27988 | 0.72 | 0.822055 |
Target: 5'- -aGAU-GGUCCUcCAGGuCCAACUGGu -3' miRNA: 3'- ggCUGuCCAGGGuGUCCuGGUUGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 22960 | 0.72 | 0.805413 |
Target: 5'- uCCuGCugguGGUCCUcCAGGuCCAACUGGu -3' miRNA: 3'- -GGcUGu---CCAGGGuGUCCuGGUUGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 28087 | 0.72 | 0.788198 |
Target: 5'- uCCuGCuGGUCCUcCAGGACCucCUGGu -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCUGGuuGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27386 | 0.72 | 0.779394 |
Target: 5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3' miRNA: 3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27314 | 0.72 | 0.779394 |
Target: 5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3' miRNA: 3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 21655 | 0.73 | 0.761432 |
Target: 5'- gUGAUgcuGGUCCaACAGGuCCAACUGGu -3' miRNA: 3'- gGCUGu--CCAGGgUGUCCuGGUUGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27483 | 0.73 | 0.75229 |
Target: 5'- ------nGUCCCACAGGuCCAACUGGu -3' miRNA: 3'- ggcugucCAGGGUGUCCuGGUUGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 23446 | 0.74 | 0.724317 |
Target: 5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3' miRNA: 3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27824 | 0.74 | 0.714837 |
Target: 5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5' |
|||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27458 | 1.12 | 0.004704 |
Target: 5'- uCCGACAGGUCCCACAGGACCAACUGGu -3' miRNA: 3'- -GGCUGUCCAGGGUGUCCUGGUUGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home