miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 24742 0.71 0.853394
Target:  5'- uCCucCAGGUCCUcCAGGuCCAACaGGa -3'
miRNA:   3'- -GGcuGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 26524 0.71 0.838066
Target:  5'- uCCuGCuGGUCCaC-CAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGG-GuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27988 0.72 0.822055
Target:  5'- -aGAU-GGUCCUcCAGGuCCAACUGGu -3'
miRNA:   3'- ggCUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22030 0.72 0.822055
Target:  5'- aCCGuCuGGaCCCGUAGGACCAGCaGGa -3'
miRNA:   3'- -GGCuGuCCaGGGUGUCCUGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 23364 0.72 0.822055
Target:  5'- cCUGGauuugaAGGaCCUACAGGACCAGUUGGa -3'
miRNA:   3'- -GGCUg-----UCCaGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 28119 0.72 0.805413
Target:  5'- cCUG-UAGGUCCUGUAGGACCAGUUGGa -3'
miRNA:   3'- -GGCuGUCCAGGGUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22960 0.72 0.805413
Target:  5'- uCCuGCugguGGUCCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGu---CCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 28087 0.72 0.788198
Target:  5'- uCCuGCuGGUCCUcCAGGACCucCUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCUGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27314 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27386 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 21655 0.73 0.761432
Target:  5'- gUGAUgcuGGUCCaACAGGuCCAACUGGu -3'
miRNA:   3'- gGCUGu--CCAGGgUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27483 0.73 0.75229
Target:  5'- ------nGUCCCACAGGuCCAACUGGu -3'
miRNA:   3'- ggcugucCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23446 0.74 0.724317
Target:  5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 27824 0.74 0.714837
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27233 0.74 0.714837
Target:  5'- uCCaGCAGGUCCUACAGGuCCAuCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUuGaCC- -5'
31683 3' -55.4 NC_006883.1 + 28366 0.74 0.714837
Target:  5'- aCCaGgAGGUCCUGgAGGACCAGCaGGa -3'
miRNA:   3'- -GGcUgUCCAGGGUgUCCUGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 21572 0.74 0.705293
Target:  5'- uCCGAgugguggucCuGGUCCUACuGGACCuGCUGGu -3'
miRNA:   3'- -GGCU---------GuCCAGGGUGuCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22860 0.75 0.656879
Target:  5'- cCCGAucCAGGUgCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGCU--GUCCAgGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23323 0.75 0.627553
Target:  5'- aCCaGCAGGaCCUugAGGACCAGUUGGa -3'
miRNA:   3'- -GGcUGUCCaGGGugUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21464 0.76 0.608006
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGa -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.