Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31683 | 5' | -54.7 | NC_006883.1 | + | 21525 | 0.74 | 0.642444 |
Target: 5'- gGUCCAGguggcggucCUGGUCCUGCUGGcccuCAAGGu -3' miRNA: 3'- -CAGGUU---------GACCAGGACGACCuc--GUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21971 | 0.77 | 0.503156 |
Target: 5'- gGUCCucCUGGUCCUGCUGGAucugcugguGCGAu- -3' miRNA: 3'- -CAGGuuGACCAGGACGACCU---------CGUUcu -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21453 | 0.77 | 0.474824 |
Target: 5'- gGUCCuACUGGUCCUGCUGGuccucCAGGu -3' miRNA: 3'- -CAGGuUGACCAGGACGACCuc---GUUCu -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 222678 | 0.78 | 0.42947 |
Target: 5'- gGUCCuGCUGGUCCUGCUGGu---GGAa -3' miRNA: 3'- -CAGGuUGACCAGGACGACCucguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21606 | 0.78 | 0.421579 |
Target: 5'- gGUCCucCUGGUCCUGCUGGugguccuccagguccGCAAGGu -3' miRNA: 3'- -CAGGuuGACCAGGACGACCu--------------CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 27492 | 1.09 | 0.005635 |
Target: 5'- gGUCCAACUGGUCCUGCUGGAGCAAGAa -3' miRNA: 3'- -CAGGUUGACCAGGACGACCUCGUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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