miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 5' -54.7 NC_006883.1 + 21453 0.77 0.474824
Target:  5'- gGUCCuACUGGUCCUGCUGGuccucCAGGu -3'
miRNA:   3'- -CAGGuUGACCAGGACGACCuc---GUUCu -5'
31683 5' -54.7 NC_006883.1 + 21525 0.74 0.642444
Target:  5'- gGUCCAGguggcggucCUGGUCCUGCUGGcccuCAAGGu -3'
miRNA:   3'- -CAGGUU---------GACCAGGACGACCuc--GUUCU- -5'
31683 5' -54.7 NC_006883.1 + 21606 0.78 0.421579
Target:  5'- gGUCCucCUGGUCCUGCUGGugguccuccagguccGCAAGGu -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCu--------------CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 21672 0.74 0.682796
Target:  5'- gGUCCAACUGGUCCUcCUGGuacuGGAu -3'
miRNA:   3'- -CAGGUUGACCAGGAcGACCucguUCU- -5'
31683 5' -54.7 NC_006883.1 + 21741 0.83 0.22863
Target:  5'- gGUCCAACUGGUCCUGCUGGuccuaCGGGu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuc---GUUCu -5'
31683 5' -54.7 NC_006883.1 + 21744 0.67 0.946506
Target:  5'- uUCCAGUUGGaCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- cAGGUUGACCaGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 21786 0.84 0.212589
Target:  5'- gGUCCAACUGGUCCUGCUGGuGGUc--- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACC-UCGuucu -5'
31683 5' -54.7 NC_006883.1 + 21843 0.71 0.823666
Target:  5'- gGUCCGAgugguggagaUGGUCCUGCUGGucCAAGu -3'
miRNA:   3'- -CAGGUUg---------ACCAGGACGACCucGUUCu -5'
31683 5' -54.7 NC_006883.1 + 21913 0.68 0.923674
Target:  5'- cUCCAGguccuagugguggucCUGGUCCUGCUGGuccuccaGGUcAGAu -3'
miRNA:   3'- cAGGUU---------------GACCAGGACGACC-------UCGuUCU- -5'
31683 5' -54.7 NC_006883.1 + 21971 0.77 0.503156
Target:  5'- gGUCCucCUGGUCCUGCUGGAucugcugguGCGAu- -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCU---------CGUUcu -5'
31683 5' -54.7 NC_006883.1 + 22216 0.67 0.96196
Target:  5'- -aCCAuCUGGaCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- caGGUuGACCaGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 22878 0.9 0.089462
Target:  5'- gGUCCAACUGGUCCUGCUGGuGCuccAGGu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuCGu--UCU- -5'
31683 5' -54.7 NC_006883.1 + 22950 0.7 0.840167
Target:  5'- gGUCCc-CUGGUCCUGCUGGuGGUc--- -3'
miRNA:   3'- -CAGGuuGACCAGGACGACC-UCGuucu -5'
31683 5' -54.7 NC_006883.1 + 22979 0.85 0.174489
Target:  5'- gGUCCAACUGGUCCUGCUGGuGau-GAu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuCguuCU- -5'
31683 5' -54.7 NC_006883.1 + 23042 0.72 0.751494
Target:  5'- gGUCCAACUgguccucaaGGUCCUGCUGGuucucCAGGu -3'
miRNA:   3'- -CAGGUUGA---------CCAGGACGACCuc---GUUCu -5'
31683 5' -54.7 NC_006883.1 + 23078 0.71 0.832005
Target:  5'- nGUCCAACUGGUCCUGUaGGuccuuCAAa- -3'
miRNA:   3'- -CAGGUUGACCAGGACGaCCuc---GUUcu -5'
31683 5' -54.7 NC_006883.1 + 23410 0.66 0.965278
Target:  5'- -aCCAuCUGGUCCaGUUGGAccuGUggGAc -3'
miRNA:   3'- caGGUuGACCAGGaCGACCU---CGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 23462 0.67 0.950705
Target:  5'- gGUCCAGCaGGUCCUcCUGGAucugguggugguGCAAa- -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGACCU------------CGUUcu -5'
31683 5' -54.7 NC_006883.1 + 23681 0.8 0.362526
Target:  5'- gGUCCGACUGGUUCUGCUGGuauuGGAu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCucguUCU- -5'
31683 5' -54.7 NC_006883.1 + 23735 0.68 0.932527
Target:  5'- aUCCAGgaGGaCCUGCUGGAccuGgAGGAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCU---CgUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.