miRNA display CGI


Results 41 - 59 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 27278 0.76 0.657226
Target:  5'- -uCCUcCAGGUCCAGgUGGUCCAGgUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUgACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 27305 0.68 0.973258
Target:  5'- uGGC--ACAGGUCCAGCaGGUCCucCa -3'
miRNA:   3'- -CUGgaUGUCCAGGUUGaCCAGGuuGa -5'
31684 3' -52.9 NC_006883.1 + 27378 0.67 0.986105
Target:  5'- --aCUcCAGGUCCAGCaGGUCCucCa -3'
miRNA:   3'- cugGAuGUCCAGGUUGaCCAGGuuGa -5'
31684 3' -52.9 NC_006883.1 + 27449 0.75 0.737168
Target:  5'- -uCCUACuGGUCCGACaGGUCCcACa -3'
miRNA:   3'- cuGGAUGuCCAGGUUGaCCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 27485 0.85 0.252713
Target:  5'- -uCCcACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27833 0.83 0.341344
Target:  5'- -uCCUcCAGGUCCAACUGGUCCuACa -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 27858 1.08 0.009881
Target:  5'- gGACCUACAGGUCCAACUGGUCCAACUg -3'
miRNA:   3'- -CUGGAUGUCCAGGUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 27887 0.75 0.737168
Target:  5'- -uCCUuCAGGUggAACUGGUCCAACUg -3'
miRNA:   3'- cuGGAuGUCCAggUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 27939 0.75 0.717546
Target:  5'- gGugCUAUgguggaacuGGUCCGACUGGUCCuGCUg -3'
miRNA:   3'- -CugGAUGu--------CCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27994 0.84 0.291048
Target:  5'- -uCCUcCAGGUCCAACUGGUCCAGg- -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 28015 0.74 0.775254
Target:  5'- nGGCggaACuGGUCCAACUGGUCCuACUg -3'
miRNA:   3'- -CUGga-UGuCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 28063 0.75 0.727398
Target:  5'- -uCCUcCAGGUCCAggcggaACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGU------UGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 28193 0.68 0.967495
Target:  5'- gGACCUcCAGGUCCuACUGGUggaGAUg -3'
miRNA:   3'- -CUGGAuGUCCAGGuUGACCAgg-UUGa -5'
31684 3' -52.9 NC_006883.1 + 28246 0.83 0.319048
Target:  5'- -uCCgACuGGUCCAACUGGUCCAACa -3'
miRNA:   3'- cuGGaUGuCCAGGUUGACCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 210650 0.66 0.993586
Target:  5'- --gCUGCAuuuGGUuggCCAACUGGUCCAc-- -3'
miRNA:   3'- cugGAUGU---CCA---GGUUGACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 222645 0.74 0.756428
Target:  5'- --aCUACuGGUCCuGCUGGUCCuACUg -3'
miRNA:   3'- cugGAUGuCCAGGuUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 222680 0.71 0.914354
Target:  5'- -uCCUGCuGGUCCugcugguggAACUGGUCCAc-- -3'
miRNA:   3'- cuGGAUGuCCAGG---------UUGACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 222725 0.7 0.935779
Target:  5'- -uCCUGCuGGUUCGcCUGGUgCAACUg -3'
miRNA:   3'- cuGGAUGuCCAGGUuGACCAgGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 222800 0.74 0.7659
Target:  5'- -uCCUcCAGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGuUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.