miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 23071 0.76 0.667379
Target:  5'- -uUCUcCAGGUCCAACUGGUCCu--- -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuuga -5'
31684 3' -52.9 NC_006883.1 + 27278 0.76 0.657226
Target:  5'- -uCCUcCAGGUCCAGgUGGUCCAGgUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUgACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23158 0.76 0.657226
Target:  5'- -uCCUACAGGUCCAcCaGGUCCAGgUa -3'
miRNA:   3'- cuGGAUGUCCAGGUuGaCCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23098 0.77 0.616496
Target:  5'- -uCCUucaaaucCAGGUCCAACUGGUCCcACa -3'
miRNA:   3'- cuGGAu------GUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 22914 0.78 0.565895
Target:  5'- gGACCUGCuGGUCCugaUGGUCCAAgUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuugACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 26533 0.79 0.497122
Target:  5'- -uCCacCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGauGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26281 0.81 0.39763
Target:  5'- -uCCUACAGGUCCAGCaGGUCCucCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 21665 0.82 0.389231
Target:  5'- -uCCaACAGGUCCAACUGGUCCucCUg -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 27833 0.83 0.341344
Target:  5'- -uCCUcCAGGUCCAACUGGUCCuACa -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 27224 0.83 0.341344
Target:  5'- -uCCUACAGGUCCAGCaGGUCCuACa -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 21707 0.83 0.341344
Target:  5'- -uCCUGCAGGUCCucCUGGUCCAAgUg -3'
miRNA:   3'- cuGGAUGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23421 0.73 0.819945
Target:  5'- gGACCUGUAGGaCCAuCUGGUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUuGACCAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 26769 0.7 0.92554
Target:  5'- gGACCUGCAGGaCCAGUUGcaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUUGACcaGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23352 0.7 0.92554
Target:  5'- gGACCUACAGGaCCAGuuggacCUGGagaaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUU------GACCa---GGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23918 0.67 0.98046
Target:  5'- gGACCUGUAGGaCCuGCUGGaccuguugaUCCAACa -3'
miRNA:   3'- -CUGGAUGUCCaGGuUGACC---------AGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 21969 0.67 0.982504
Target:  5'- gGACCUGCAGGaCCAGgaGaUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUUgaCcAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 21862 0.66 0.990406
Target:  5'- gGACCaGCAGGUCCAGuaGGaCCAGg- -3'
miRNA:   3'- -CUGGaUGUCCAGGUUgaCCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 23718 0.66 0.99158
Target:  5'- gGACCUGgAGGaCCuGCUGGaCCAGa- -3'
miRNA:   3'- -CUGGAUgUCCaGGuUGACCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 23178 0.72 0.87523
Target:  5'- gGACCaGCAGGUCCAGuuaaacCUGGagcaCCAGCa -3'
miRNA:   3'- -CUGGaUGUCCAGGUU------GACCa---GGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.