miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 21863 0.73 0.836696
Target:  5'- -uCCUGCuGGUCCAAgUGGUUCAcCUg -3'
miRNA:   3'- cuGGAUGuCCAGGUUgACCAGGUuGA- -5'
31684 3' -52.9 NC_006883.1 + 21737 0.73 0.819945
Target:  5'- -uCCU---GGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuguCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 23421 0.73 0.819945
Target:  5'- gGACCUGUAGGaCCAuCUGGUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUuGACCAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 21809 0.74 0.775254
Target:  5'- -uCCUcCAGGUCCucCUGGUCCAAgUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 21464 0.74 0.775254
Target:  5'- -uCCUGCuGGUCCucCaGGUCCAACUg -3'
miRNA:   3'- cuGGAUGuCCAGGuuGaCCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 28015 0.74 0.775254
Target:  5'- nGGCggaACuGGUCCAACUGGUCCuACUg -3'
miRNA:   3'- -CUGga-UGuCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 222800 0.74 0.7659
Target:  5'- -uCCUcCAGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 222645 0.74 0.756428
Target:  5'- --aCUACuGGUCCuGCUGGUCCuACUg -3'
miRNA:   3'- cugGAUGuCCAGGuUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27449 0.75 0.737168
Target:  5'- -uCCUACuGGUCCGACaGGUCCcACa -3'
miRNA:   3'- cuGGAUGuCCAGGUUGaCCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 27887 0.75 0.737168
Target:  5'- -uCCUuCAGGUggAACUGGUCCAACUg -3'
miRNA:   3'- cuGGAuGUCCAggUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 23131 0.75 0.737168
Target:  5'- -uCCcACAGGUCCAACUGGaCCAGa- -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 26371 0.75 0.727398
Target:  5'- -uCCcACAGGUggAACUGGUCCAACUg -3'
miRNA:   3'- cuGGaUGUCCAggUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 28063 0.75 0.727398
Target:  5'- -uCCUcCAGGUCCAggcggaACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGU------UGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21509 0.75 0.717546
Target:  5'- -uCCUcCAGGUCCuuCUGGUCCAGgUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 27939 0.75 0.717546
Target:  5'- gGugCUAUgguggaacuGGUCCGACUGGUCCuGCUg -3'
miRNA:   3'- -CugGAUGu--------CCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 23071 0.76 0.667379
Target:  5'- -uUCUcCAGGUCCAACUGGUCCu--- -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuuga -5'
31684 3' -52.9 NC_006883.1 + 27278 0.76 0.657226
Target:  5'- -uCCUcCAGGUCCAGgUGGUCCAGgUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUgACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23158 0.76 0.657226
Target:  5'- -uCCUACAGGUCCAcCaGGUCCAGgUa -3'
miRNA:   3'- cuGGAUGUCCAGGUuGaCCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23098 0.77 0.616496
Target:  5'- -uCCUucaaaucCAGGUCCAACUGGUCCcACa -3'
miRNA:   3'- cuGGAu------GUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 22914 0.78 0.565895
Target:  5'- gGACCUGCuGGUCCugaUGGUCCAAgUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuugACCAGGUUgA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.