Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 212010 | 0.66 | 0.993532 |
Target: 5'- uGGAAgUGGUUCAACaGGUcaauuaaaucugCCUaGUUGGu -3' miRNA: 3'- -CCUUgACCAGGUUGaCCA------------GGA-CGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 28000 | 0.66 | 0.991555 |
Target: 5'- -----aGGUCCAACUGGUCCa----- -3' miRNA: 3'- ccuugaCCAGGUUGACCAGGacgacc -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 27305 | 0.66 | 0.987727 |
Target: 5'- uGGcACaGGUCCAGCaGGUCCUccagguccucCUGGa -3' miRNA: 3'- -CCuUGaCCAGGUUGaCCAGGAc---------GACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 21815 | 0.66 | 0.990402 |
Target: 5'- aGGuccucCUGGUCCAAgUGGUCCUc---- -3' miRNA: 3'- -CCuu---GACCAGGUUgACCAGGAcgacc -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 27446 | 0.66 | 0.989128 |
Target: 5'- aGGuccuACUGGUCCGACaGGUCCc----- -3' miRNA: 3'- -CCu---UGACCAGGUUGaCCAGGacgacc -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 230238 | 0.66 | 0.991445 |
Target: 5'- aGGugauaUGGUCUAuuacaccACUGGUUCUGCUa- -3' miRNA: 3'- -CCuug--ACCAGGU-------UGACCAGGACGAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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