Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 21815 | 0.66 | 0.990402 |
Target: 5'- aGGuccucCUGGUCCAAgUGGUCCUc---- -3' miRNA: 3'- -CCuu---GACCAGGUUgACCAGGAcgacc -5' |
|||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 27749 | 0.66 | 0.990402 |
Target: 5'- uGGAcCUGuGggaCCAGUUGGUCCUGUgGGa -3' miRNA: 3'- -CCUuGAC-Ca--GGUUGACCAGGACGaCC- -5' |
|||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 230238 | 0.66 | 0.991445 |
Target: 5'- aGGugauaUGGUCUAuuacaccACUGGUUCUGCUa- -3' miRNA: 3'- -CCuug--ACCAGGU-------UGACCAGGACGAcc -5' |
|||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 28000 | 0.66 | 0.991555 |
Target: 5'- -----aGGUCCAACUGGUCCa----- -3' miRNA: 3'- ccuugaCCAGGUUGACCAGGacgacc -5' |
|||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 220755 | 0.66 | 0.993532 |
Target: 5'- uGGAGCUGGUUCuuCUGGUggaUCUaGCg-- -3' miRNA: 3'- -CCUUGACCAGGuuGACCA---GGA-CGacc -5' |
|||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 212010 | 0.66 | 0.993532 |
Target: 5'- uGGAAgUGGUUCAACaGGUcaauuaaaucugCCUaGUUGGu -3' miRNA: 3'- -CCUUgACCAGGUUGaCCA------------GGA-CGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home