Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 222698 | 0.95 | 0.063065 |
Target: 5'- uGGAACUGGUCCAcaagguucacCUGGUCCUGCUGGu -3' miRNA: 3'- -CCUUGACCAGGUu---------GACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 23676 | 0.97 | 0.053836 |
Target: 5'- -cAACUGGUCCGACUGGUUCUGCUGGu -3' miRNA: 3'- ccUUGACCAGGUUGACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 28018 | 1.01 | 0.029975 |
Target: 5'- cGGAACUGGUCCAACUGGUCCUaCUGGu -3' miRNA: 3'- -CCUUGACCAGGUUGACCAGGAcGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 21734 | 1.02 | 0.025522 |
Target: 5'- aGGucCUGGUCCAACUGGUCCUGCUGGu -3' miRNA: 3'- -CCuuGACCAGGUUGACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 27949 | 1.12 | 0.00594 |
Target: 5'- uGGAACUGGUCCGACUGGUCCUGCUGGu -3' miRNA: 3'- -CCUUGACCAGGUUGACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 27896 | 1.12 | 0.005476 |
Target: 5'- uGGAACUGGUCCAACUGGUCCUGCUGGu -3' miRNA: 3'- -CCUUGACCAGGUUGACCAGGACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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