miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 27749 0.66 0.990402
Target:  5'- uGGAcCUGuGggaCCAGUUGGUCCUGUgGGa -3'
miRNA:   3'- -CCUuGAC-Ca--GGUUGACCAGGACGaCC- -5'
31684 5' -53.6 NC_006883.1 + 27839 0.72 0.872006
Target:  5'- -----aGGUCCAACUGGUCCUaCaGGa -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 27871 0.8 0.436191
Target:  5'- -cAACUGGUCCAACUGGUCCUuCaGGn -3'
miRNA:   3'- ccUUGACCAGGUUGACCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 27896 1.12 0.005476
Target:  5'- uGGAACUGGUCCAACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 27949 1.12 0.00594
Target:  5'- uGGAACUGGUCCGACUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 28000 0.66 0.991555
Target:  5'- -----aGGUCCAACUGGUCCa----- -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 28018 1.01 0.029975
Target:  5'- cGGAACUGGUCCAACUGGUCCUaCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 28078 0.87 0.190964
Target:  5'- cGGAACUGGUCCuGCUGGUCCuccaggaccuccuggUGCUGa -3'
miRNA:   3'- -CCUUGACCAGGuUGACCAGG---------------ACGACc -5'
31684 5' -53.6 NC_006883.1 + 28177 0.69 0.958235
Target:  5'- aGGAAgUGGUCCuccagGACcuccaGGUCCUaCUGGu -3'
miRNA:   3'- -CCUUgACCAGG-----UUGa----CCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 28237 0.95 0.070049
Target:  5'- uGGAACUGGUCCGACUGGUCCaaCUGGu -3'
miRNA:   3'- -CCUUGACCAGGUUGACCAGGacGACC- -5'
31684 5' -53.6 NC_006883.1 + 31568 0.71 0.892517
Target:  5'- ----aUGuUCCAccuaaucuaaaaGCUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugACcAGGU------------UGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 39879 0.66 0.987727
Target:  5'- uGGuGCUGGUgguaaUGGUgCUGCUGGu -3'
miRNA:   3'- -CCuUGACCAgguugACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 112272 0.71 0.905109
Target:  5'- uGGAACUGGUgCUAAUUuugguggcGGUCCaGCUGa -3'
miRNA:   3'- -CCUUGACCA-GGUUGA--------CCAGGaCGACc -5'
31684 5' -53.6 NC_006883.1 + 173071 0.71 0.885893
Target:  5'- uGGAcCUGGUgCAguaguaACUGGaaCUGCUGGa -3'
miRNA:   3'- -CCUuGACCAgGU------UGACCagGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 192092 0.67 0.9852
Target:  5'- uGGccuGCUGGUgUAggugguaaggguaauGCUGGUgUUGCUGGu -3'
miRNA:   3'- -CCu--UGACCAgGU---------------UGACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 194095 0.68 0.968111
Target:  5'- uGGAGCaaUGGUUgG--UGGUgCUGCUGGu -3'
miRNA:   3'- -CCUUG--ACCAGgUugACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 212010 0.66 0.993532
Target:  5'- uGGAAgUGGUUCAACaGGUcaauuaaaucugCCUaGUUGGu -3'
miRNA:   3'- -CCUUgACCAGGUUGaCCA------------GGA-CGACC- -5'
31684 5' -53.6 NC_006883.1 + 220755 0.66 0.993532
Target:  5'- uGGAGCUGGUUCuuCUGGUggaUCUaGCg-- -3'
miRNA:   3'- -CCUUGACCAGGuuGACCA---GGA-CGacc -5'
31684 5' -53.6 NC_006883.1 + 222638 0.82 0.369382
Target:  5'- --uGCUGGUacuACUGGUCCUGCUGGu -3'
miRNA:   3'- ccuUGACCAgguUGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 222668 0.89 0.14397
Target:  5'- uGGuucucCUGGUCCuGCUGGUCCUGCUGGn -3'
miRNA:   3'- -CCuu---GACCAGGuUGACCAGGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.