Results 61 - 66 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31684 | 5' | -53.6 | NC_006883.1 | + | 222698 | 0.95 | 0.063065 |
Target: 5'- uGGAACUGGUCCAcaagguucacCUGGUCCUGCUGGu -3' miRNA: 3'- -CCUUGACCAGGUu---------GACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 222738 | 0.85 | 0.246231 |
Target: 5'- ---cCUGGUgCAACUGGUCCUGUUGGa -3' miRNA: 3'- ccuuGACCAgGUUGACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 222767 | 0.81 | 0.393605 |
Target: 5'- uGGuccuACUGGUCCuucuGgUGGUCCUGUUGGu -3' miRNA: 3'- -CCu---UGACCAGGu---UgACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 222806 | 0.81 | 0.410316 |
Target: 5'- -----aGGUCCucCUGGUCCUGCUGGu -3' miRNA: 3'- ccuugaCCAGGuuGACCAGGACGACC- -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 230238 | 0.66 | 0.991445 |
Target: 5'- aGGugauaUGGUCUAuuacaccACUGGUUCUGCUa- -3' miRNA: 3'- -CCuug--ACCAGGU-------UGACCAGGACGAcc -5' |
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31684 | 5' | -53.6 | NC_006883.1 | + | 230293 | 0.69 | 0.942072 |
Target: 5'- -uAACUaaGGUCCAauuuGCUGGUgUUGUUGGg -3' miRNA: 3'- ccUUGA--CCAGGU----UGACCAgGACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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