miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 24717 0.7 0.916806
Target:  5'- -cAAgUGGUCCAAgUGGUCCUaGC-GGu -3'
miRNA:   3'- ccUUgACCAGGUUgACCAGGA-CGaCC- -5'
31684 5' -53.6 NC_006883.1 + 23728 0.7 0.916806
Target:  5'- aGGAccuGCUGGaCCuGgaGGaCCUGCUGGa -3'
miRNA:   3'- -CCU---UGACCaGGuUgaCCaGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 112272 0.71 0.905109
Target:  5'- uGGAACUGGUgCUAAUUuugguggcGGUCCaGCUGa -3'
miRNA:   3'- -CCUUGACCA-GGUUGA--------CCAGGaCGACc -5'
31684 5' -53.6 NC_006883.1 + 31568 0.71 0.892517
Target:  5'- ----aUGuUCCAccuaaucuaaaaGCUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugACcAGGU------------UGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 173071 0.71 0.885893
Target:  5'- uGGAcCUGGUgCAguaguaACUGGaaCUGCUGGa -3'
miRNA:   3'- -CCUuGACCAgGU------UGACCagGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 27839 0.72 0.872006
Target:  5'- -----aGGUCCAACUGGUCCUaCaGGa -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 23452 0.72 0.864753
Target:  5'- aGGucCUccaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCuuGA---CCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 21484 0.72 0.857299
Target:  5'- -cAACUGGaaUAACUGGUCCUuCUGGu -3'
miRNA:   3'- ccUUGACCagGUUGACCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 23413 0.72 0.857299
Target:  5'- aGGAccauCUGGUCCAGUUGGaCCUGUgGGa -3'
miRNA:   3'- -CCUu---GACCAGGUUGACCaGGACGaCC- -5'
31684 5' -53.6 NC_006883.1 + 21842 0.73 0.833797
Target:  5'- -----aGGUCCGAgugguggagaUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGUUg---------ACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 21695 0.74 0.791228
Target:  5'- uGGAucucCUGGUCCuGCaGGUCCUcCUGGu -3'
miRNA:   3'- -CCUu---GACCAGGuUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 22909 0.74 0.791228
Target:  5'- -uAACUGGaCCuGCUGGUCCUGaUGGu -3'
miRNA:   3'- ccUUGACCaGGuUGACCAGGACgACC- -5'
31684 5' -53.6 NC_006883.1 + 26278 0.74 0.754666
Target:  5'- aGGuccuACaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCu---UGaCCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 21928 0.74 0.754666
Target:  5'- ----gUGGUCC---UGGUCCUGCUGGu -3'
miRNA:   3'- ccuugACCAGGuugACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 23398 0.79 0.49061
Target:  5'- uGGuGCUGGUggUgGAcCUGGUCCUGCUGGu -3'
miRNA:   3'- -CCuUGACCA--GgUU-GACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26425 0.8 0.481313
Target:  5'- uGGAACUgguacuccaGGUCCAGCaGGUCCUcCUGGa -3'
miRNA:   3'- -CCUUGA---------CCAGGUUGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 23077 0.8 0.453954
Target:  5'- -----aGGUCCAACUGGUCCUGUaGGu -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGACGaCC- -5'
31684 5' -53.6 NC_006883.1 + 27871 0.8 0.436191
Target:  5'- -cAACUGGUCCAACUGGUCCUuCaGGn -3'
miRNA:   3'- ccUUGACCAGGUUGACCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 222806 0.81 0.410316
Target:  5'- -----aGGUCCucCUGGUCCUGCUGGu -3'
miRNA:   3'- ccuugaCCAGGuuGACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 222767 0.81 0.393605
Target:  5'- uGGuccuACUGGUCCuucuGgUGGUCCUGUUGGu -3'
miRNA:   3'- -CCu---UGACCAGGu---UgACCAGGACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.