Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31685 | 3' | -55.8 | NC_006883.1 | + | 222720 | 0.79 | 0.428112 |
Target: 5'- ---cCUGGUCCUGCUGGUUCgcCUGGu -3' miRNA: 3'- ggcuGACCAGGACGACCAGGauGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21845 | 0.79 | 0.419653 |
Target: 5'- uCCGAgugguggagaUGGUCCUGCUGGUCCaAgUGGu -3' miRNA: 3'- -GGCUg---------ACCAGGACGACCAGGaUgACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28246 | 0.79 | 0.419653 |
Target: 5'- uCCGACUGGUCCaaCUGGUCCaACaGGu -3' miRNA: 3'- -GGCUGACCAGGacGACCAGGaUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23044 | 0.79 | 0.419653 |
Target: 5'- uCCaACUGGUCCUcaaGGUCCUGCUGGu -3' miRNA: 3'- -GGcUGACCAGGAcgaCCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21693 | 0.79 | 0.403043 |
Target: 5'- aCUGGaucucCUGGUCCUGCaGGUCCUcCUGGu -3' miRNA: 3'- -GGCU-----GACCAGGACGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27476 | 0.79 | 0.401405 |
Target: 5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3' miRNA: 3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 222800 | 0.78 | 0.462924 |
Target: 5'- uCCucCaGGUCCUcCUGGUCCUGCUGGu -3' miRNA: 3'- -GGcuGaCCAGGAcGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23080 | 0.78 | 0.457607 |
Target: 5'- uCCaACUGGUCCUGUaGGUCCUucaaauccagguccaACUGGu -3' miRNA: 3'- -GGcUGACCAGGACGaCCAGGA---------------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21928 | 0.78 | 0.436671 |
Target: 5'- gUGGucCUGGUCCUGCUGGUCCUcCaGGu -3' miRNA: 3'- gGCU--GACCAGGACGACCAGGAuGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23725 | 0.76 | 0.546131 |
Target: 5'- aCCuGCUGGaCCUGgaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACgaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21518 | 0.75 | 0.584689 |
Target: 5'- uCCuuCUGGUCCaggugGCgguccUGGUCCUGCUGGc -3' miRNA: 3'- -GGcuGACCAGGa----CG-----ACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21572 | 0.75 | 0.613955 |
Target: 5'- uCCGAgUGGUggUcCUGGUCCUACUGGn -3' miRNA: 3'- -GGCUgACCAggAcGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26551 | 0.74 | 0.662888 |
Target: 5'- aCCuGCUGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 22981 | 0.74 | 0.682354 |
Target: 5'- uCCaACUGGUCCUGCUGGUgaUGaUGGu -3' miRNA: 3'- -GGcUGACCAGGACGACCAggAUgACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 31587 | 0.74 | 0.672636 |
Target: 5'- --aGCUGGUCCUGCUGGUggauuaagUGCUGGu -3' miRNA: 3'- ggcUGACCAGGACGACCAgg------AUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 22916 | 0.74 | 0.653118 |
Target: 5'- aCCuGCUGGUCCUGaUGGUCCaAgUGGn -3' miRNA: 3'- -GGcUGACCAGGACgACCAGGaUgACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 193992 | 0.7 | 0.879458 |
Target: 5'- uUGG-UGGUgCUGCUGGUgCUACUGu -3' miRNA: 3'- gGCUgACCAgGACGACCAgGAUGACc -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 121314 | 0.69 | 0.892631 |
Target: 5'- gCCGAUgcuacUgCUGCUGGUCCaguUGCUGGu -3' miRNA: 3'- -GGCUGacc--AgGACGACCAGG---AUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26281 | 0.69 | 0.904968 |
Target: 5'- uCCuACaGGUCCaGCaGGUCCUcCUGGa -3' miRNA: 3'- -GGcUGaCCAGGaCGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27860 | 0.69 | 0.904968 |
Target: 5'- aCCuACaGGUCCaaCUGGUCCaACUGGu -3' miRNA: 3'- -GGcUGaCCAGGacGACCAGGaUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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