Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31685 | 3' | -55.8 | NC_006883.1 | + | 22880 | 0.82 | 0.267337 |
Target: 5'- uCCaACUGGUCCUGCUGGUgCUccagguuuaACUGGa -3' miRNA: 3'- -GGcUGACCAGGACGACCAgGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28017 | 0.82 | 0.273462 |
Target: 5'- gCGgaACUGGUCCaaCUGGUCCUACUGGu -3' miRNA: 3'- gGC--UGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21845 | 0.79 | 0.419653 |
Target: 5'- uCCGAgugguggagaUGGUCCUGCUGGUCCaAgUGGu -3' miRNA: 3'- -GGCUg---------ACCAGGACGACCAGGaUgACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28246 | 0.79 | 0.419653 |
Target: 5'- uCCGACUGGUCCaaCUGGUCCaACaGGu -3' miRNA: 3'- -GGCUGACCAGGacGACCAGGaUGaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23044 | 0.79 | 0.419653 |
Target: 5'- uCCaACUGGUCCUcaaGGUCCUGCUGGu -3' miRNA: 3'- -GGcUGACCAGGAcgaCCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21693 | 0.79 | 0.403043 |
Target: 5'- aCUGGaucucCUGGUCCUGCaGGUCCUcCUGGu -3' miRNA: 3'- -GGCU-----GACCAGGACGaCCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27476 | 0.79 | 0.401405 |
Target: 5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3' miRNA: 3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 21788 | 0.8 | 0.371102 |
Target: 5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3' miRNA: 3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 22943 | 0.8 | 0.348306 |
Target: 5'- uCCucCUGGUCCc-CUGGUCCUGCUGGu -3' miRNA: 3'- -GGcuGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27815 | 0.81 | 0.333673 |
Target: 5'- -aGAUUuaGGUCCUGCUGGUCCUccagguccaACUGGu -3' miRNA: 3'- ggCUGA--CCAGGACGACCAGGA---------UGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23683 | 0.81 | 0.319495 |
Target: 5'- uCCGACUGGUUCUGCUGGU---AUUGGa -3' miRNA: 3'- -GGCUGACCAGGACGACCAggaUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27899 | 0.81 | 0.319495 |
Target: 5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3' miRNA: 3'- ggcUGACCAGGacGACCAGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23411 | 0.82 | 0.299085 |
Target: 5'- -gGAcCUGGUCCUGCUGGUCCUccagguccauCUGGu -3' miRNA: 3'- ggCU-GACCAGGACGACCAGGAu---------GACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 26551 | 0.74 | 0.662888 |
Target: 5'- aCCuGCUGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 28333 | 0.67 | 0.949756 |
Target: 5'- uCCGcCUGGaCCUGgaGGaCCUGgaGGa -3' miRNA: 3'- -GGCuGACCaGGACgaCCaGGAUgaCC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 27511 | 0.67 | 0.949756 |
Target: 5'- cCUGA-UGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- -GGCUgACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23927 | 0.66 | 0.975299 |
Target: 5'- -gGACcaguUGGaCCUGUaGGaCCUGCUGGa -3' miRNA: 3'- ggCUG----ACCaGGACGaCCaGGAUGACC- -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 38578 | 0.66 | 0.975299 |
Target: 5'- aCCGAaauaUGGUCCUGCcuUGGUUacACUa- -3' miRNA: 3'- -GGCUg---ACCAGGACG--ACCAGgaUGAcc -5' |
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31685 | 3' | -55.8 | NC_006883.1 | + | 23725 | 0.76 | 0.546131 |
Target: 5'- aCCuGCUGGaCCUGgaGGaCCUGCUGGa -3' miRNA: 3'- -GGcUGACCaGGACgaCCaGGAUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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