miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 21743 0.94 0.057942
Target:  5'- uCCaACUGGUCCUGCUGGUCCUACgGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAGGAUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 222671 0.95 0.048332
Target:  5'- uUCucCUGGUCCUGCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222645 0.98 0.03021
Target:  5'- aCuACUGGUCCUGCUGGUCCUACUGGu -3'
miRNA:   3'- gGcUGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 28017 0.82 0.273462
Target:  5'- gCGgaACUGGUCCaaCUGGUCCUACUGGu -3'
miRNA:   3'- gGC--UGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23411 0.82 0.299085
Target:  5'- -gGAcCUGGUCCUGCUGGUCCUccagguccauCUGGu -3'
miRNA:   3'- ggCU-GACCAGGACGACCAGGAu---------GACC- -5'
31685 3' -55.8 NC_006883.1 + 27899 0.81 0.319495
Target:  5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3'
miRNA:   3'- ggcUGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23080 0.78 0.457607
Target:  5'- uCCaACUGGUCCUGUaGGUCCUucaaauccagguccaACUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGaCCAGGA---------------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 21928 0.78 0.436671
Target:  5'- gUGGucCUGGUCCUGCUGGUCCUcCaGGu -3'
miRNA:   3'- gGCU--GACCAGGACGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 222720 0.79 0.428112
Target:  5'- ---cCUGGUCCUGCUGGUUCgcCUGGu -3'
miRNA:   3'- ggcuGACCAGGACGACCAGGauGACC- -5'
31685 3' -55.8 NC_006883.1 + 21845 0.79 0.419653
Target:  5'- uCCGAgugguggagaUGGUCCUGCUGGUCCaAgUGGu -3'
miRNA:   3'- -GGCUg---------ACCAGGACGACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 28246 0.79 0.419653
Target:  5'- uCCGACUGGUCCaaCUGGUCCaACaGGu -3'
miRNA:   3'- -GGCUGACCAGGacGACCAGGaUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 23044 0.79 0.419653
Target:  5'- uCCaACUGGUCCUcaaGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGAcgaCCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21693 0.79 0.403043
Target:  5'- aCUGGaucucCUGGUCCUGCaGGUCCUcCUGGu -3'
miRNA:   3'- -GGCU-----GACCAGGACGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 27476 0.79 0.401405
Target:  5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3'
miRNA:   3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21788 0.8 0.371102
Target:  5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 22943 0.8 0.348306
Target:  5'- uCCucCUGGUCCc-CUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 27815 0.81 0.333673
Target:  5'- -aGAUUuaGGUCCUGCUGGUCCUccagguccaACUGGu -3'
miRNA:   3'- ggCUGA--CCAGGACGACCAGGA---------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 23683 0.81 0.319495
Target:  5'- uCCGACUGGUUCUGCUGGU---AUUGGa -3'
miRNA:   3'- -GGCUGACCAGGACGACCAggaUGACC- -5'
31685 3' -55.8 NC_006883.1 + 27958 1.12 0.004155
Target:  5'- uCCGACUGGUCCUGCUGGUCCUACUGGu -3'
miRNA:   3'- -GGCUGACCAGGACGACCAGGAUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.