miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 26281 0.69 0.904968
Target:  5'- uCCuACaGGUCCaGCaGGUCCUcCUGGa -3'
miRNA:   3'- -GGcUGaCCAGGaCGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 121314 0.69 0.892631
Target:  5'- gCCGAUgcuacUgCUGCUGGUCCaguUGCUGGu -3'
miRNA:   3'- -GGCUGacc--AgGACGACCAGG---AUGACC- -5'
31685 3' -55.8 NC_006883.1 + 193992 0.7 0.879458
Target:  5'- uUGG-UGGUgCUGCUGGUgCUACUGu -3'
miRNA:   3'- gGCUgACCAgGACGACCAgGAUGACc -5'
31685 3' -55.8 NC_006883.1 + 22981 0.74 0.682354
Target:  5'- uCCaACUGGUCCUGCUGGUgaUGaUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGACCAggAUgACC- -5'
31685 3' -55.8 NC_006883.1 + 31587 0.74 0.672636
Target:  5'- --aGCUGGUCCUGCUGGUggauuaagUGCUGGu -3'
miRNA:   3'- ggcUGACCAGGACGACCAgg------AUGACC- -5'
31685 3' -55.8 NC_006883.1 + 26551 0.74 0.662888
Target:  5'- aCCuGCUGGaCCUGUaGGaCCUGCUGGa -3'
miRNA:   3'- -GGcUGACCaGGACGaCCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 22916 0.74 0.653118
Target:  5'- aCCuGCUGGUCCUGaUGGUCCaAgUGGn -3'
miRNA:   3'- -GGcUGACCAGGACgACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 21572 0.75 0.613955
Target:  5'- uCCGAgUGGUggUcCUGGUCCUACUGGn -3'
miRNA:   3'- -GGCUgACCAggAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21518 0.75 0.584689
Target:  5'- uCCuuCUGGUCCaggugGCgguccUGGUCCUGCUGGc -3'
miRNA:   3'- -GGcuGACCAGGa----CG-----ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23725 0.76 0.546131
Target:  5'- aCCuGCUGGaCCUGgaGGaCCUGCUGGa -3'
miRNA:   3'- -GGcUGACCaGGACgaCCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222800 0.78 0.462924
Target:  5'- uCCucCaGGUCCUcCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGaCCAGGAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23080 0.78 0.457607
Target:  5'- uCCaACUGGUCCUGUaGGUCCUucaaauccagguccaACUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGaCCAGGA---------------UGACC- -5'
31685 3' -55.8 NC_006883.1 + 21928 0.78 0.436671
Target:  5'- gUGGucCUGGUCCUGCUGGUCCUcCaGGu -3'
miRNA:   3'- gGCU--GACCAGGACGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 222720 0.79 0.428112
Target:  5'- ---cCUGGUCCUGCUGGUUCgcCUGGu -3'
miRNA:   3'- ggcuGACCAGGACGACCAGGauGACC- -5'
31685 3' -55.8 NC_006883.1 + 23044 0.79 0.419653
Target:  5'- uCCaACUGGUCCUcaaGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGACCAGGAcgaCCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 28246 0.79 0.419653
Target:  5'- uCCGACUGGUCCaaCUGGUCCaACaGGu -3'
miRNA:   3'- -GGCUGACCAGGacGACCAGGaUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21845 0.79 0.419653
Target:  5'- uCCGAgugguggagaUGGUCCUGCUGGUCCaAgUGGu -3'
miRNA:   3'- -GGCUg---------ACCAGGACGACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 21693 0.79 0.403043
Target:  5'- aCUGGaucucCUGGUCCUGCaGGUCCUcCUGGu -3'
miRNA:   3'- -GGCU-----GACCAGGACGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 27476 0.79 0.401405
Target:  5'- aCCaACUGGUCCcacagguccaaCUGGUCCUGCUGGa -3'
miRNA:   3'- -GGcUGACCAGGac---------GACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21788 0.8 0.371102
Target:  5'- uCCaACUGGUCCUGCUggugguccuccaGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGACCAGGACGA------------CCAGGAuGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.