miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 5' -57.4 NC_006883.1 + 28244 0.76 0.42592
Target:  5'- gGUCCgacuGGUCCAACUGGUCCAacaGGUc -3'
miRNA:   3'- -CAGGagguCCAGGUUGACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21835 0.77 0.392675
Target:  5'- nUCCUCCAGGUCCGAgugguggagaUGGUCCugcuGGUc -3'
miRNA:   3'- cAGGAGGUCCAGGUUg---------ACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27860 0.78 0.353564
Target:  5'- -aCCUaCAGGUCCAACUGGUCCAa-- -3'
miRNA:   3'- caGGAgGUCCAGGUUGACCAGGUccg -5'
31685 5' -57.4 NC_006883.1 + 22941 0.78 0.353564
Target:  5'- gGUCCUCCuGGUCCc-CUGGUCCugcuGGUn -3'
miRNA:   3'- -CAGGAGGuCCAGGuuGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27222 0.78 0.33871
Target:  5'- gGUCCUaCAGGUCCAGCaGGUCCuacAGGUc -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGaCCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 28289 0.78 0.324314
Target:  5'- gGUCCUCCAGGUCCAcCaGGaacUUCAGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGUuGaCC---AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 21714 0.79 0.303583
Target:  5'- gGUCCUCCuGGUCCAAguggaggucCUGGUCCAacuGGUc -3'
miRNA:   3'- -CAGGAGGuCCAGGUU---------GACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21945 0.79 0.303583
Target:  5'- gGUCCUCCAggucagauGGUCCAAgUGGUCCuccuGGUc -3'
miRNA:   3'- -CAGGAGGU--------CCAGGUUgACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27378 0.79 0.290338
Target:  5'- --aCUCCAGGUCCAGCaGGUCCuccAGGUc -3'
miRNA:   3'- cagGAGGUCCAGGUUGaCCAGG---UCCG- -5'
31685 5' -57.4 NC_006883.1 + 24678 0.8 0.265215
Target:  5'- cUCCUCCAGGUCCuACaGGUCCAaguGGUc -3'
miRNA:   3'- cAGGAGGUCCAGGuUGaCCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27483 0.8 0.265215
Target:  5'- gGUCC-CaCAGGUCCAACUGGUCCugcuGGa -3'
miRNA:   3'- -CAGGaG-GUCCAGGUUGACCAGGu---CCg -5'
31685 5' -57.4 NC_006883.1 + 222669 0.8 0.259215
Target:  5'- gGUUCUCCuGGUCCuGCUGGUCCugcuGGUg -3'
miRNA:   3'- -CAGGAGGuCCAGGuUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26717 0.8 0.253328
Target:  5'- gGUUCUCCAGGUCCucCUGGUUCuGGUu -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCAGGuCCG- -5'
31685 5' -57.4 NC_006883.1 + 23156 0.81 0.230871
Target:  5'- gGUCCUaCAGGUCCAcCaGGUCCAGGUa -3'
miRNA:   3'- -CAGGAgGUCCAGGUuGaCCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 28195 0.81 0.227651
Target:  5'- -aCCUCCAGGUCCuacuGguggagaugguccucCUGGUCCAGGUg -3'
miRNA:   3'- caGGAGGUCCAGGu---U---------------GACCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 27885 0.82 0.215149
Target:  5'- gGUCCUUCAgguggaacuGGUCCAACUGGUCCugcuGGUg -3'
miRNA:   3'- -CAGGAGGU---------CCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 21606 0.82 0.195623
Target:  5'- gGUCCUCCuGGUCCuGCUGGugguccUCCAGGUc -3'
miRNA:   3'- -CAGGAGGuCCAGGuUGACC------AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 24749 0.83 0.182011
Target:  5'- gGUCCUCCAGGUCCAACaGGagguUCUGGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGaCC----AGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 21471 0.83 0.173408
Target:  5'- gGUCCUCCAGGUCCAACUGGaauaaCuGGUc -3'
miRNA:   3'- -CAGGAGGUCCAGGUUGACCag---GuCCG- -5'
31685 5' -57.4 NC_006883.1 + 23101 0.85 0.142529
Target:  5'- uUCaaaUCCAGGUCCAACUGGUCCcacAGGUc -3'
miRNA:   3'- cAGg--AGGUCCAGGUUGACCAGG---UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.