Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31686 | 3' | -49.8 | NC_006883.1 | + | 26719 | 0.72 | 0.973789 |
Target: 5'- uUCUCCAGGUcCUccUGGUUCUGGUu- -3' miRNA: 3'- -GGAGGUCCAaGAcuACCAAGACUAcc -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 222671 | 0.72 | 0.971037 |
Target: 5'- uUCUCCuGGUcCUGcUGGUccugCUGGUGGa -3' miRNA: 3'- -GGAGGuCCAaGACuACCAa---GACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28418 | 0.73 | 0.961549 |
Target: 5'- aUUUCAaGUUCUGGUGGUgguaCUGGUGGu -3' miRNA: 3'- gGAGGUcCAAGACUACCAa---GACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28195 | 0.74 | 0.93159 |
Target: 5'- aCCUCCAGGUccuaCUGGUGGa---GAUGGu -3' miRNA: 3'- -GGAGGUCCAa---GACUACCaagaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27278 | 0.74 | 0.92637 |
Target: 5'- uCCUCCAGGUcCaGGUGGUcCaGGUGGu -3' miRNA: 3'- -GGAGGUCCAaGaCUACCAaGaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28105 | 0.75 | 0.915215 |
Target: 5'- aCCUCCuGGUgCUGAcGGUgaUGAUGGg -3' miRNA: 3'- -GGAGGuCCAaGACUaCCAagACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 222800 | 0.75 | 0.896709 |
Target: 5'- uCCUCCAGGUcCUccUGGUccugCUGGUGGu -3' miRNA: 3'- -GGAGGUCCAaGAcuACCAa---GACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 111904 | 0.76 | 0.876136 |
Target: 5'- aCUCCAGGUaaUGAUGGUcaaGAUGGa -3' miRNA: 3'- gGAGGUCCAagACUACCAagaCUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 41479 | 0.76 | 0.868837 |
Target: 5'- uCCUCUuGGUUCUGAaGGUaCUGuAUGGg -3' miRNA: 3'- -GGAGGuCCAAGACUaCCAaGAC-UACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 22899 | 0.77 | 0.853609 |
Target: 5'- gCUCCAGGUUuaacuggacCUGcUGGUcCUGAUGGu -3' miRNA: 3'- gGAGGUCCAA---------GACuACCAaGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27395 | 0.84 | 0.486413 |
Target: 5'- uCCUCCAGGUccUCcuggaaaUGAUGGUgCUGAUGGa -3' miRNA: 3'- -GGAGGUCCA--AG-------ACUACCAaGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 27323 | 0.89 | 0.299886 |
Target: 5'- uCCUCCAGGuccuccuggaaaugaUggugCUGAUGGUUCUGAUGGu -3' miRNA: 3'- -GGAGGUCC---------------Aa---GACUACCAAGACUACC- -5' |
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31686 | 3' | -49.8 | NC_006883.1 | + | 28150 | 1.14 | 0.010861 |
Target: 5'- uCCUCCAGGUUCUGAUGGUUCUGAUGGa -3' miRNA: 3'- -GGAGGUCCAAGACUACCAAGACUACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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