Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31686 | 5' | -58.1 | NC_006883.1 | + | 26405 | 0.73 | 0.548993 |
Target: 5'- gGUCCUCCAGGuccaggugguggaACugguaCUCCAGGUCCaGCa -3' miRNA: 3'- -CAGGAGGUCC-------------UG-----GAGGUCCAGGaUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 222669 | 0.74 | 0.521443 |
Target: 5'- gGUUCUCCuGGuCCUgCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGuCCuGGAgGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27240 | 0.74 | 0.493527 |
Target: 5'- gGUCCUaCAGGuCCaUCAGGUCCUACa -3' miRNA: 3'- -CAGGAgGUCCuGGaGGUCCAGGAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23417 | 0.74 | 0.493527 |
Target: 5'- gGUCCUgCuGGuCCUCCAGGUCCa--- -3' miRNA: 3'- -CAGGAgGuCCuGGAGGUCCAGGauga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21606 | 0.74 | 0.489856 |
Target: 5'- gGUCCUCCugguccugcugguGGuCCUCCAGGUCC-GCa -3' miRNA: 3'- -CAGGAGGu------------CCuGGAGGUCCAGGaUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 22887 | 0.74 | 0.484373 |
Target: 5'- gGUCCUgCuGGugCUCCAGGUuuaacuggaCCUGCUg -3' miRNA: 3'- -CAGGAgGuCCugGAGGUCCA---------GGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 24678 | 0.74 | 0.475302 |
Target: 5'- cUCCUCCAGGuCCUaCAGGUCCa--- -3' miRNA: 3'- cAGGAGGUCCuGGAgGUCCAGGauga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23024 | 0.75 | 0.456533 |
Target: 5'- gGUCCUCCAGGuaucggugguccaACUggUCCucaAGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCC-------------UGG--AGG---UCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27204 | 0.75 | 0.431287 |
Target: 5'- gGUCCgcaAGGugCUCCuGGUCCUACa -3' miRNA: 3'- -CAGGaggUCCugGAGGuCCAGGAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 26717 | 0.76 | 0.397848 |
Target: 5'- gGUUCUCCAGGuCCUCCuGGUUCUGg- -3' miRNA: 3'- -CAGGAGGUCCuGGAGGuCCAGGAUga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 28271 | 0.77 | 0.366119 |
Target: 5'- gGUCCUUCAGGuggaagugguCCUCCAGGUCCa--- -3' miRNA: 3'- -CAGGAGGUCCu---------GGAGGUCCAGGauga -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21462 | 0.77 | 0.328979 |
Target: 5'- gGUCCUgCuGGuCCUCCAGGUCCaACUg -3' miRNA: 3'- -CAGGAgGuCCuGGAGGUCCAGGaUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27831 | 0.78 | 0.314921 |
Target: 5'- gGUCCUCCAGGuCCaaCuGGUCCUACa -3' miRNA: 3'- -CAGGAGGUCCuGGagGuCCAGGAUGa -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 22941 | 0.78 | 0.308065 |
Target: 5'- gGUCCUCCuGGuCC-CCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGuCCuGGaGGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21945 | 0.79 | 0.277996 |
Target: 5'- gGUCCUCCAGGucAgaugguccaagugguCCUCCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCC--U---------------GGAGGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 22970 | 0.79 | 0.257309 |
Target: 5'- gGUCCUCCAGGuCCaaCuGGUCCUGCUg -3' miRNA: 3'- -CAGGAGGUCCuGGagGuCCAGGAUGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 23453 | 0.8 | 0.240117 |
Target: 5'- gGUCCUCCAGGuCCagCAGGUCCUcCUg -3' miRNA: 3'- -CAGGAGGUCCuGGagGUCCAGGAuGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27312 | 0.8 | 0.240117 |
Target: 5'- gGUCCagCAGGuCCUCCAGGUCCUcCUg -3' miRNA: 3'- -CAGGagGUCCuGGAGGUCCAGGAuGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 27384 | 0.8 | 0.240117 |
Target: 5'- gGUCCagCAGGuCCUCCAGGUCCUcCUg -3' miRNA: 3'- -CAGGagGUCCuGGAGGUCCAGGAuGA- -5' |
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31686 | 5' | -58.1 | NC_006883.1 | + | 21498 | 0.8 | 0.223894 |
Target: 5'- gGUCCUUCuGGuCCUCCAGGUCCUuCUg -3' miRNA: 3'- -CAGGAGGuCCuGGAGGUCCAGGAuGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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