miRNA: 3'- guuaCCUagUCU----AUGGUGUUGUCCCu -5'
miRNA: 3'- gUUACCUAgUCUAug-GUGUUGUCC-CU- -5'
miRNA: 3'- -GUU-ACCUA---------GUCUAUGGUGUUGUCCcu -5'
miRNA: 3'- guuaCCUAGUC------UAUGGUGUUGUCCcu -5'
miRNA: 3'- -GUUACCUAGUCUAUGGUGUUGUCCCU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31690 | 3' | -48.5 | NC_006884.1 | + | 12938 | 0.69 | 0.994737 |
|
Target: 5'- ---aGGA--AGAauugUACCACAGCAGGGu -3' miRNA: 3'- guuaCCUagUCU----AUGGUGUUGUCCCu -5' |
|||||||
| 31690 | 3' | -48.5 | NC_006884.1 | + | 91677 | 0.69 | 0.99062 |
|
Target: 5'- gAAUGGGUgAGAUugaCAUAACAGGaGAc -3' miRNA: 3'- gUUACCUAgUCUAug-GUGUUGUCC-CU- -5' |
|||||||
| 31690 | 3' | -48.5 | NC_006884.1 | + | 158077 | 0.7 | 0.989272 |
|
Target: 5'- aCAAcUGGAUauacuggugCAGAUGCUGCAACAGGu- -3' miRNA: 3'- -GUU-ACCUA---------GUCUAUGGUGUUGUCCcu -5' |
|||||||
| 31690 | 3' | -48.5 | NC_006884.1 | + | 151732 | 0.72 | 0.966203 |
|
Target: 5'- ---aGGAUUAGuaccaaAUACCACAGCAGGa- -3' miRNA: 3'- guuaCCUAGUC------UAUGGUGUUGUCCcu -5' |
|||||||
| 31690 | 3' | -48.5 | NC_006884.1 | + | 21296 | 1.1 | 0.015225 |
|
Target: 5'- uCAAUGGAUCAGAUACCACAACAGGGAg -3' miRNA: 3'- -GUUACCUAGUCUAUGGUGUUGUCCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home