miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31692 5' -51 NC_006884.1 + 141218 0.66 0.995145
Target:  5'- aUAGUAUGAccauuugugauuGUuccuGGuGCACCUGUuCCu -3'
miRNA:   3'- gAUCAUACU------------CAu---CCuCGUGGACGuGG- -5'
31692 5' -51 NC_006884.1 + 59676 0.66 0.992469
Target:  5'- ----aAUGuaaaAGGAGCAUCUGCACUu -3'
miRNA:   3'- gaucaUACuca-UCCUCGUGGACGUGG- -5'
31692 5' -51 NC_006884.1 + 62436 0.68 0.983698
Target:  5'- aCUGGUgGUGAu--GGuGCAUCUGCACg -3'
miRNA:   3'- -GAUCA-UACUcauCCuCGUGGACGUGg -5'
31692 5' -51 NC_006884.1 + 67566 0.68 0.980396
Target:  5'- aUAGUuaaaugaggaucuuaAUGAaacuGUAGGAGUugaugaguauCCUGCACCa -3'
miRNA:   3'- gAUCA---------------UACU----CAUCCUCGu---------GGACGUGG- -5'
31692 5' -51 NC_006884.1 + 28854 0.68 0.976618
Target:  5'- ----gGUGGGUAGGAGCACaacuagaaagaGCAUCa -3'
miRNA:   3'- gaucaUACUCAUCCUCGUGga---------CGUGG- -5'
31692 5' -51 NC_006884.1 + 38496 0.69 0.971758
Target:  5'- cCUGuGUAUGAGUaugcAGuGAccGUACCUGCugCa -3'
miRNA:   3'- -GAU-CAUACUCA----UC-CU--CGUGGACGugG- -5'
31692 5' -51 NC_006884.1 + 80218 0.71 0.908198
Target:  5'- aUGGUAUGAaaUAGGuGCACCUGUAg- -3'
miRNA:   3'- gAUCAUACUc-AUCCuCGUGGACGUgg -5'
31692 5' -51 NC_006884.1 + 82970 0.72 0.873728
Target:  5'- aCUuGUAUGuGUAGGuGCaguaccACCUGCACUu -3'
miRNA:   3'- -GAuCAUACuCAUCCuCG------UGGACGUGG- -5'
31692 5' -51 NC_006884.1 + 5957 0.73 0.842007
Target:  5'- uUGGUAgaaaacucaGGUAGuGcAGCACCUGCGCCu -3'
miRNA:   3'- gAUCAUac-------UCAUC-C-UCGUGGACGUGG- -5'
31692 5' -51 NC_006884.1 + 129621 0.8 0.472219
Target:  5'- -gAGUAUGAGuUAGGugaaaAGCaACCUGCACCu -3'
miRNA:   3'- gaUCAUACUC-AUCC-----UCG-UGGACGUGG- -5'
31692 5' -51 NC_006884.1 + 95367 1.13 0.005633
Target:  5'- gCUAGUAUGAGUAGGAGCACCUGCACCu -3'
miRNA:   3'- -GAUCAUACUCAUCCUCGUGGACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.