Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3171 | 5' | -55.1 | NC_001500.1 | + | 172 | 1.08 | 3.9e-05 |
Target: 5'- gGGGCCAAGAACAGAUGGUCCCCAGAUa -3' miRNA: 3'- -CCCGGUUCUUGUCUACCAGGGGUCUA- -5' |
|||||||
3171 | 5' | -55.1 | NC_001500.1 | + | 5949 | 1.08 | 3.9e-05 |
Target: 5'- gGGGCCAAGAACAGAUGGUCCCCAGAUa -3' miRNA: 3'- -CCCGGUUCUUGUCUACCAGGGGUCUA- -5' |
|||||||
3171 | 5' | -55.1 | NC_001500.1 | + | 2523 | 0.71 | 0.055859 |
Target: 5'- aGGCCuGGggUc-GUGGUCCCCGGGg -3' miRNA: 3'- cCCGGuUCuuGucUACCAGGGGUCUa -5' |
|||||||
3171 | 5' | -55.1 | NC_001500.1 | + | 1145 | 0.66 | 0.140045 |
Target: 5'- uGGCCAcucggcAGAGCAGAaGGUgaCCCAGc- -3' miRNA: 3'- cCCGGU------UCUUGUCUaCCAg-GGGUCua -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home