miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31713 3' -58.7 NC_006938.1 + 59315 0.66 0.595563
Target:  5'- aCGG-CAGGuaUCCGGCCGUGAucugguaGAGg -3'
miRNA:   3'- cGCCgGUCUucAGGCCGGCACU-------CUCa -5'
31713 3' -58.7 NC_006938.1 + 27824 0.66 0.563958
Target:  5'- gGCGGCCGGAagggucaGGUCCaGCUG-GAcGGGc -3'
miRNA:   3'- -CGCCGGUCU-------UCAGGcCGGCaCU-CUCa -5'
31713 3' -58.7 NC_006938.1 + 52411 0.66 0.554558
Target:  5'- cGgGGCCAGGgcGGUggcaacaaCCGGCCcGUGAcAGUg -3'
miRNA:   3'- -CgCCGGUCU--UCA--------GGCCGG-CACUcUCA- -5'
31713 3' -58.7 NC_006938.1 + 37065 0.67 0.533843
Target:  5'- cGUGGgaCCAGAGGccCCGGCagCGUGAGAc- -3'
miRNA:   3'- -CGCC--GGUCUUCa-GGCCG--GCACUCUca -5'
31713 3' -58.7 NC_006938.1 + 12049 0.67 0.523588
Target:  5'- cCGGCCGGAAGUCC-GCCcUGAa--- -3'
miRNA:   3'- cGCCGGUCUUCAGGcCGGcACUcuca -5'
31713 3' -58.7 NC_006938.1 + 60379 0.67 0.513409
Target:  5'- aGUGGCCAGcuGGaCCGGCaccaacGAGAGUg -3'
miRNA:   3'- -CGCCGGUCu-UCaGGCCGgca---CUCUCA- -5'
31713 3' -58.7 NC_006938.1 + 31615 0.67 0.493303
Target:  5'- aGCGGaCCaAGAAGUucauggacaagCCGGUCGUG-GAGc -3'
miRNA:   3'- -CGCC-GG-UCUUCA-----------GGCCGGCACuCUCa -5'
31713 3' -58.7 NC_006938.1 + 58652 0.68 0.42606
Target:  5'- cGCGGCCGGAGacacaauuGUCCaGGCgGUGAcuGGUc -3'
miRNA:   3'- -CGCCGGUCUU--------CAGG-CCGgCACUc-UCA- -5'
31713 3' -58.7 NC_006938.1 + 15827 0.69 0.389294
Target:  5'- -aGGCCAGAGGUCUGGaucucguCCGUGGcaaccgcgcuGAGg -3'
miRNA:   3'- cgCCGGUCUUCAGGCC-------GGCACU----------CUCa -5'
31713 3' -58.7 NC_006938.1 + 34284 0.7 0.372975
Target:  5'- -gGGCCAGGGcGUCUacuCCGUGGGAGUg -3'
miRNA:   3'- cgCCGGUCUU-CAGGcc-GGCACUCUCA- -5'
31713 3' -58.7 NC_006938.1 + 21114 0.71 0.302173
Target:  5'- aCGGCaAGGGuUCCGGCCGaGGGAGUg -3'
miRNA:   3'- cGCCGgUCUUcAGGCCGGCaCUCUCA- -5'
31713 3' -58.7 NC_006938.1 + 42481 0.72 0.25397
Target:  5'- uGgGGCCGGAAGguggucgucgugaUCCGGCCGUucGGGa -3'
miRNA:   3'- -CgCCGGUCUUC-------------AGGCCGGCAcuCUCa -5'
31713 3' -58.7 NC_006938.1 + 62347 1.09 0.000568
Target:  5'- gGCGGCCAGAAGUCCGGCCGUGAGAGUg -3'
miRNA:   3'- -CGCCGGUCUUCAGGCCGGCACUCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.