miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31713 5' -55.1 NC_006938.1 + 54402 0.66 0.727713
Target:  5'- gUGGCCAgagcuGGCgACGCacUUGCACAc -3'
miRNA:   3'- -ACUGGUacu--CCGgUGCGaaGACGUGU- -5'
31713 5' -55.1 NC_006938.1 + 35174 0.66 0.725579
Target:  5'- aUGACCccacgaaggagGAGGUCAuCGCcaugCUGCACGa -3'
miRNA:   3'- -ACUGGua---------CUCCGGU-GCGaa--GACGUGU- -5'
31713 5' -55.1 NC_006938.1 + 29814 0.66 0.717006
Target:  5'- gGACCAgauccacAGGaUCGCGUgUCUGCACGg -3'
miRNA:   3'- aCUGGUac-----UCC-GGUGCGaAGACGUGU- -5'
31713 5' -55.1 NC_006938.1 + 57868 0.67 0.651381
Target:  5'- uUGACCuUGAGGCCGcCGUgaCUGUg-- -3'
miRNA:   3'- -ACUGGuACUCCGGU-GCGaaGACGugu -5'
31713 5' -55.1 NC_006938.1 + 51789 0.67 0.640318
Target:  5'- aGACCAUcGAGGCgACcaacCggCUGCGCGa -3'
miRNA:   3'- aCUGGUA-CUCCGgUGc---GaaGACGUGU- -5'
31713 5' -55.1 NC_006938.1 + 45764 0.67 0.640318
Target:  5'- cGAUCAUGAGGguCUugGaCUUCUGCu-- -3'
miRNA:   3'- aCUGGUACUCC--GGugC-GAAGACGugu -5'
31713 5' -55.1 NC_006938.1 + 41153 0.68 0.614859
Target:  5'- aUGACCA--GGGCCGucuCGCUcugggucgcgggguUCUGCACc -3'
miRNA:   3'- -ACUGGUacUCCGGU---GCGA--------------AGACGUGu -5'
31713 5' -55.1 NC_006938.1 + 29519 0.68 0.585084
Target:  5'- cGGCCcgGAGGCCugGacccgCUGguCGc -3'
miRNA:   3'- aCUGGuaCUCCGGugCgaa--GACguGU- -5'
31713 5' -55.1 NC_006938.1 + 39877 0.68 0.57412
Target:  5'- cGGCCAUGccgcccuGGCCGacgucgcgcUGCUUCgGCACGa -3'
miRNA:   3'- aCUGGUACu------CCGGU---------GCGAAGaCGUGU- -5'
31713 5' -55.1 NC_006938.1 + 55507 0.71 0.419282
Target:  5'- cGACCAcggaGGGGCCACGCcUCgGCGa- -3'
miRNA:   3'- aCUGGUa---CUCCGGUGCGaAGaCGUgu -5'
31713 5' -55.1 NC_006938.1 + 62381 1.09 0.001102
Target:  5'- aUGACCAUGAGGCCACGCUUCUGCACAc -3'
miRNA:   3'- -ACUGGUACUCCGGUGCGAAGACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.