miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31714 5' -57.6 NC_006938.1 + 47511 0.66 0.642896
Target:  5'- aACCuGUcauUCC-UCUGGGAGGGCCUa -3'
miRNA:   3'- gUGGuCGc--AGGcAGACUCUCCUGGAg -5'
31714 5' -57.6 NC_006938.1 + 46415 0.66 0.642896
Target:  5'- -uCCAG-GUCCuGUCcGGcGAGGACCUUg -3'
miRNA:   3'- guGGUCgCAGG-CAGaCU-CUCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 42170 0.66 0.632144
Target:  5'- gACCGGUccuggaaggGUCCGaUCUGcGAGGuCCUUg -3'
miRNA:   3'- gUGGUCG---------CAGGC-AGACuCUCCuGGAG- -5'
31714 5' -57.6 NC_006938.1 + 25970 0.66 0.631069
Target:  5'- -uCCAGCGgggCCGUCUGGGuGGcgaugguGCCc- -3'
miRNA:   3'- guGGUCGCa--GGCAGACUCuCC-------UGGag -5'
31714 5' -57.6 NC_006938.1 + 62599 0.66 0.61065
Target:  5'- aGCUgAGaGUCCGcCUGcuugacguagcGGAGGACCUCg -3'
miRNA:   3'- gUGG-UCgCAGGCaGAC-----------UCUCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 8306 0.66 0.596712
Target:  5'- gACCGGCucGUCUGcCUGuccaaugaccacgaGGAGGGCCUg -3'
miRNA:   3'- gUGGUCG--CAGGCaGAC--------------UCUCCUGGAg -5'
31714 5' -57.6 NC_006938.1 + 23414 0.67 0.578563
Target:  5'- aGCCAGCGUCUGUCaUGucc--ACCUCg -3'
miRNA:   3'- gUGGUCGCAGGCAG-ACucuccUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 36288 0.68 0.515717
Target:  5'- gACCAGCG-CCG-CUGGaAGGACUUg -3'
miRNA:   3'- gUGGUCGCaGGCaGACUcUCCUGGAg -5'
31714 5' -57.6 NC_006938.1 + 51947 0.68 0.504478
Target:  5'- gGCuCGGCGgugCCGcccgaUCUGccgcgaaggacguGGAGGACCUCg -3'
miRNA:   3'- gUG-GUCGCa--GGC-----AGAC-------------UCUCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 56992 0.69 0.465538
Target:  5'- --aCAGCGaCgGUCUGGGAGGugGCCUUu -3'
miRNA:   3'- gugGUCGCaGgCAGACUCUCC--UGGAG- -5'
31714 5' -57.6 NC_006938.1 + 31785 0.69 0.426351
Target:  5'- gCACCAGCGUgccgaagUCGUCgucGuGGACCUCc -3'
miRNA:   3'- -GUGGUCGCA-------GGCAGacuCuCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 36236 0.72 0.301989
Target:  5'- gACCAGCGUcucgcCCGUCUG--GGGACCg- -3'
miRNA:   3'- gUGGUCGCA-----GGCAGACucUCCUGGag -5'
31714 5' -57.6 NC_006938.1 + 61344 0.77 0.135217
Target:  5'- cCACaUAGCGUUCGUCaaGGAGGGCCUCg -3'
miRNA:   3'- -GUG-GUCGCAGGCAGacUCUCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 16798 0.86 0.032188
Target:  5'- gCGCCAGCGggagCCGUCUGAcucGAGGAUCUCg -3'
miRNA:   3'- -GUGGUCGCa---GGCAGACU---CUCCUGGAG- -5'
31714 5' -57.6 NC_006938.1 + 61546 1.08 0.000822
Target:  5'- cCACCAGCGUCCGUCUGAGAGGACCUCc -3'
miRNA:   3'- -GUGGUCGCAGGCAGACUCUCCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.