miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31715 3' -56.7 NC_006938.1 + 12783 0.66 0.68668
Target:  5'- gCUGCUCCaggacGGAGcgGaGCUCGUCGc -3'
miRNA:   3'- gGACGAGGgu---CUUCuaC-CGAGCGGUc -5'
31715 3' -56.7 NC_006938.1 + 12863 0.66 0.685608
Target:  5'- aCCUGUgggccaaUCCUGGAccAGGc-GCUCGCCGGg -3'
miRNA:   3'- -GGACG-------AGGGUCU--UCUacCGAGCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 9347 0.66 0.680244
Target:  5'- aCCUGCgUCCCGucgacGAAGAggcggagguuguugcUGGCgUCGCgAGu -3'
miRNA:   3'- -GGACG-AGGGU-----CUUCU---------------ACCG-AGCGgUC- -5'
31715 3' -56.7 NC_006938.1 + 4044 0.66 0.675945
Target:  5'- gCCUGg-CCCGGAcgAGGcUGGCauccgccgCGCCAGa -3'
miRNA:   3'- -GGACgaGGGUCU--UCU-ACCGa-------GCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 1279 0.67 0.632705
Target:  5'- aCCUGCgcgucgaagCCCAGGAGcagGGCaaCGCUGGu -3'
miRNA:   3'- -GGACGa--------GGGUCUUCua-CCGa-GCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 53864 0.67 0.632705
Target:  5'- uCCUGCUCgaaCAGcggguAGAUGGCcCGUCGa -3'
miRNA:   3'- -GGACGAGg--GUCu----UCUACCGaGCGGUc -5'
31715 3' -56.7 NC_006938.1 + 47770 0.67 0.611043
Target:  5'- gCUGCUCCaugAGcGGAgugGGCUCugacacaccgGCCAGg -3'
miRNA:   3'- gGACGAGGg--UCuUCUa--CCGAG----------CGGUC- -5'
31715 3' -56.7 NC_006938.1 + 22308 0.67 0.578703
Target:  5'- gUUGCUgaCCCAcauGGAGAUGGCUC-CCGu -3'
miRNA:   3'- gGACGA--GGGU---CUUCUACCGAGcGGUc -5'
31715 3' -56.7 NC_006938.1 + 20143 0.68 0.567998
Target:  5'- cCCcGcCUCCCAcGggGA-GGCcUGCCAGa -3'
miRNA:   3'- -GGaC-GAGGGU-CuuCUaCCGaGCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 15368 0.68 0.546747
Target:  5'- aCCUGCguguugucgCCCGuGGGAUugGGCUUGCCGa -3'
miRNA:   3'- -GGACGa--------GGGUcUUCUA--CCGAGCGGUc -5'
31715 3' -56.7 NC_006938.1 + 1720 0.69 0.484753
Target:  5'- --cGCUUgCAGAAGAUGGUguugaucugaGCCAGg -3'
miRNA:   3'- ggaCGAGgGUCUUCUACCGag--------CGGUC- -5'
31715 3' -56.7 NC_006938.1 + 27155 0.7 0.445341
Target:  5'- aCUGCgUCCauCAGAcGAUGGCgCGCCAc -3'
miRNA:   3'- gGACG-AGG--GUCUuCUACCGaGCGGUc -5'
31715 3' -56.7 NC_006938.1 + 52957 0.7 0.445341
Target:  5'- --gGCUCCC-GAGGGUGGUgcaUCGaCCAGc -3'
miRNA:   3'- ggaCGAGGGuCUUCUACCG---AGC-GGUC- -5'
31715 3' -56.7 NC_006938.1 + 13140 0.71 0.389767
Target:  5'- uCCUGgUCCCgugcaacuGGAAcGAUGGCagGCCGGu -3'
miRNA:   3'- -GGACgAGGG--------UCUU-CUACCGagCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 42202 0.72 0.34706
Target:  5'- gCCaGCUUCCAGAAGGccUGGUacccgUUGCCGGa -3'
miRNA:   3'- -GGaCGAGGGUCUUCU--ACCG-----AGCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 8001 0.72 0.342166
Target:  5'- cCCaGCUCCCgcccgucauGGGAGGUGGCUUcuucacggaggccaaGCCGGa -3'
miRNA:   3'- -GGaCGAGGG---------UCUUCUACCGAG---------------CGGUC- -5'
31715 3' -56.7 NC_006938.1 + 30860 0.72 0.32309
Target:  5'- gCUGCUUgCGGAuc--GGCUCGCCGGu -3'
miRNA:   3'- gGACGAGgGUCUucuaCCGAGCGGUC- -5'
31715 3' -56.7 NC_006938.1 + 5414 0.73 0.29964
Target:  5'- aCUGCUCCuggcucaCAGAAGAcaGCUCGCCGa -3'
miRNA:   3'- gGACGAGG-------GUCUUCUacCGAGCGGUc -5'
31715 3' -56.7 NC_006938.1 + 19373 0.74 0.252224
Target:  5'- uCCU-CUUCCAGAAGAaGGUUCGCgAGg -3'
miRNA:   3'- -GGAcGAGGGUCUUCUaCCGAGCGgUC- -5'
31715 3' -56.7 NC_006938.1 + 60258 1.11 0.000581
Target:  5'- cCCUGCUCCCAGAAGAUGGCUCGCCAGg -3'
miRNA:   3'- -GGACGAGGGUCUUCUACCGAGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.