Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31715 | 3' | -56.7 | NC_006938.1 | + | 12783 | 0.66 | 0.68668 |
Target: 5'- gCUGCUCCaggacGGAGcgGaGCUCGUCGc -3' miRNA: 3'- gGACGAGGgu---CUUCuaC-CGAGCGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 12863 | 0.66 | 0.685608 |
Target: 5'- aCCUGUgggccaaUCCUGGAccAGGc-GCUCGCCGGg -3' miRNA: 3'- -GGACG-------AGGGUCU--UCUacCGAGCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 9347 | 0.66 | 0.680244 |
Target: 5'- aCCUGCgUCCCGucgacGAAGAggcggagguuguugcUGGCgUCGCgAGu -3' miRNA: 3'- -GGACG-AGGGU-----CUUCU---------------ACCG-AGCGgUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 4044 | 0.66 | 0.675945 |
Target: 5'- gCCUGg-CCCGGAcgAGGcUGGCauccgccgCGCCAGa -3' miRNA: 3'- -GGACgaGGGUCU--UCU-ACCGa-------GCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 1279 | 0.67 | 0.632705 |
Target: 5'- aCCUGCgcgucgaagCCCAGGAGcagGGCaaCGCUGGu -3' miRNA: 3'- -GGACGa--------GGGUCUUCua-CCGa-GCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 53864 | 0.67 | 0.632705 |
Target: 5'- uCCUGCUCgaaCAGcggguAGAUGGCcCGUCGa -3' miRNA: 3'- -GGACGAGg--GUCu----UCUACCGaGCGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 47770 | 0.67 | 0.611043 |
Target: 5'- gCUGCUCCaugAGcGGAgugGGCUCugacacaccgGCCAGg -3' miRNA: 3'- gGACGAGGg--UCuUCUa--CCGAG----------CGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 22308 | 0.67 | 0.578703 |
Target: 5'- gUUGCUgaCCCAcauGGAGAUGGCUC-CCGu -3' miRNA: 3'- gGACGA--GGGU---CUUCUACCGAGcGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 20143 | 0.68 | 0.567998 |
Target: 5'- cCCcGcCUCCCAcGggGA-GGCcUGCCAGa -3' miRNA: 3'- -GGaC-GAGGGU-CuuCUaCCGaGCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 15368 | 0.68 | 0.546747 |
Target: 5'- aCCUGCguguugucgCCCGuGGGAUugGGCUUGCCGa -3' miRNA: 3'- -GGACGa--------GGGUcUUCUA--CCGAGCGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 1720 | 0.69 | 0.484753 |
Target: 5'- --cGCUUgCAGAAGAUGGUguugaucugaGCCAGg -3' miRNA: 3'- ggaCGAGgGUCUUCUACCGag--------CGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 27155 | 0.7 | 0.445341 |
Target: 5'- aCUGCgUCCauCAGAcGAUGGCgCGCCAc -3' miRNA: 3'- gGACG-AGG--GUCUuCUACCGaGCGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 52957 | 0.7 | 0.445341 |
Target: 5'- --gGCUCCC-GAGGGUGGUgcaUCGaCCAGc -3' miRNA: 3'- ggaCGAGGGuCUUCUACCG---AGC-GGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 13140 | 0.71 | 0.389767 |
Target: 5'- uCCUGgUCCCgugcaacuGGAAcGAUGGCagGCCGGu -3' miRNA: 3'- -GGACgAGGG--------UCUU-CUACCGagCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 42202 | 0.72 | 0.34706 |
Target: 5'- gCCaGCUUCCAGAAGGccUGGUacccgUUGCCGGa -3' miRNA: 3'- -GGaCGAGGGUCUUCU--ACCG-----AGCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 8001 | 0.72 | 0.342166 |
Target: 5'- cCCaGCUCCCgcccgucauGGGAGGUGGCUUcuucacggaggccaaGCCGGa -3' miRNA: 3'- -GGaCGAGGG---------UCUUCUACCGAG---------------CGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 30860 | 0.72 | 0.32309 |
Target: 5'- gCUGCUUgCGGAuc--GGCUCGCCGGu -3' miRNA: 3'- gGACGAGgGUCUucuaCCGAGCGGUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 5414 | 0.73 | 0.29964 |
Target: 5'- aCUGCUCCuggcucaCAGAAGAcaGCUCGCCGa -3' miRNA: 3'- gGACGAGG-------GUCUUCUacCGAGCGGUc -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 19373 | 0.74 | 0.252224 |
Target: 5'- uCCU-CUUCCAGAAGAaGGUUCGCgAGg -3' miRNA: 3'- -GGAcGAGGGUCUUCUaCCGAGCGgUC- -5' |
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31715 | 3' | -56.7 | NC_006938.1 | + | 60258 | 1.11 | 0.000581 |
Target: 5'- cCCUGCUCCCAGAAGAUGGCUCGCCAGg -3' miRNA: 3'- -GGACGAGGGUCUUCUACCGAGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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