miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31715 5' -59.2 NC_006938.1 + 50769 0.66 0.54786
Target:  5'- cUGCgcGGcgaCGAGCUCCgcUCCgUCCUGGa- -3'
miRNA:   3'- -ACGa-CCa--GCUCGAGG--AGG-AGGACCac -5'
31715 5' -59.2 NC_006938.1 + 59503 0.66 0.527101
Target:  5'- gGgaGGUCGAGCgcgUCCUUCUUCaGGa- -3'
miRNA:   3'- aCgaCCAGCUCG---AGGAGGAGGaCCac -5'
31715 5' -59.2 NC_006938.1 + 61709 0.66 0.506644
Target:  5'- cGCUGaaUGgaaccGGCUcCCUCCUCCUGGa- -3'
miRNA:   3'- aCGACcaGC-----UCGA-GGAGGAGGACCac -5'
31715 5' -59.2 NC_006938.1 + 11257 0.66 0.506644
Target:  5'- cUGCUGGUCGAcCUCCgugagaUCUUGGa- -3'
miRNA:   3'- -ACGACCAGCUcGAGGagg---AGGACCac -5'
31715 5' -59.2 NC_006938.1 + 62099 0.68 0.392397
Target:  5'- cGCccucgGGagGcAGCUCCUUCUCCUgcGGUGg -3'
miRNA:   3'- aCGa----CCagC-UCGAGGAGGAGGA--CCAC- -5'
31715 5' -59.2 NC_006938.1 + 35070 0.69 0.34998
Target:  5'- uUGCcacGGagGAGCUCCUCCUuCUUGGc- -3'
miRNA:   3'- -ACGa--CCagCUCGAGGAGGA-GGACCac -5'
31715 5' -59.2 NC_006938.1 + 28513 0.69 0.34998
Target:  5'- aUGCcgaGGUCcagggaGGCgUCCUCCUCCUGGa- -3'
miRNA:   3'- -ACGa--CCAGc-----UCG-AGGAGGAGGACCac -5'
31715 5' -59.2 NC_006938.1 + 45612 0.7 0.289133
Target:  5'- cUGUUGcUCGAuCUCCUUCUCCUGGa- -3'
miRNA:   3'- -ACGACcAGCUcGAGGAGGAGGACCac -5'
31715 5' -59.2 NC_006938.1 + 4857 0.72 0.230966
Target:  5'- aGgUGGUCGAGCUCCUgUCUCCgacGGc- -3'
miRNA:   3'- aCgACCAGCUCGAGGA-GGAGGa--CCac -5'
31715 5' -59.2 NC_006938.1 + 33908 0.74 0.178233
Target:  5'- gGCUcGUCGAGCcagaUCCUCCUCCccauggcuucUGGUGc -3'
miRNA:   3'- aCGAcCAGCUCG----AGGAGGAGG----------ACCAC- -5'
31715 5' -59.2 NC_006938.1 + 60296 1.08 0.000503
Target:  5'- gUGCUGGUCGAGCUCCUCCUCCUGGUGa -3'
miRNA:   3'- -ACGACCAGCUCGAGGAGGAGGACCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.